Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00730 ATGGGTAGAATTAGTCCTAAAGAGATTAATAAAGGTGCTTGGTCTCGAGAAGAAGATGATATTCTTTCCAAATATGTTTCCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCTCAAAATGCAGGTTTAAAGCGGTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTCAAGCCAGGTATAAAGAGAGGTGACATCTCTTCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTACTTGGTAACAGATGGTCTTTAATAGCTAAAAGGCTACCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAATACGAATCTATCAAAGAAGTTACAAAAACAACCATCATCATCTTCTGTTTTACTTCAACACAATCATCACAAATGTGGACATGTAGCACCAGAAACTCCAAGGGCTAGAAGATTGAAGATTGTTCATCAATTCAACAAAAATTTGGAGAATATTAATGGAAGTGAGTGTGATCAGGGAAGTGATGAAACTTCTATTGCTGATTATCTCATTGACATTGATCATCAAGATCATTTAATGGTTGGTGGTGATGAGTCTAACTCAAAGATTCCAAAAATGGAAGATCATAAGAAGGTAGGTTCAACTAATAGTACTCATAATAGCTCATCATCACCTTCTCATCATTGTCATCTTTTAGCAGAGAAATTTGAACCTTTTGAGACTCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 756 0.3651 MGRISPKEINKGAWSREEDDILSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISSDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPSSSSVLLQHNHHKCGHVAPETPRARRLKIVHQFNKNLENINGSECDQGSDETSIADYLIDIDHQDHLMVGGDESNSKIPKMEDHKKVGSTNSTHNSSSSPSHHCHLLAEKFEPFETLLDVELKKMASFLGLEND 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00730 251 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Trre16g00730 251 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Trre16g00730 251 FunFam Transcription factor TT2 67 135 - -
Trre16g00730 251 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Trre16g00730 251 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Trre16g00730 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Trre16g00730 251 MobiDBLite consensus disorder prediction 190 206 - -
Trre16g00730 251 SMART sant 63 111 IPR001005 -
Trre16g00730 251 SMART sant 10 60 IPR001005 -
Trre16g00730 251 MobiDBLite consensus disorder prediction 190 219 - -
Trre16g00730 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Trre16g00730 251 CDD SANT 68 109 IPR001005 -
Trre16g00730 251 Gene3D - 67 134 - -
Trre16g00730 251 Gene3D - 3 64 - -
Trre16g00730 251 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 202 - -
Trre16g00730 251 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Trre16g00730 251 FunFam MYB-related transcription factor 10 63 - -
Trre16g00730 251 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00730 Trre-Chr16 5543162 5544474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00730 8 177 MYB Transcription Factor Family AT5G40330 48.824 6.59e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g00730 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00730 K09422 - gmx:100101858 319.701