Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00717 ATGGAAGCAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGACAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATCGAAAGATCATCTTCCGGGAAGCTTCGATTAGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGGTCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGAGAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCTATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGATTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAGGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATAACTAAAAAATGCGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGTCGGAGAAGGGGATGTCAAGAATAAGGATTCATGTGTAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAGAATCTTAATACGGAGCATGATTTGGGAGATGATGAACAGCAGAGCGAACAGAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAACTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGTCGTCAACTTCTAACAAAAATACGGGACACAAACATGTTTCTCCAACTTCTCACGTCAAGCCTGCTAAGAATGTTTTACCAGAGGCAAGAACTTTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGGGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGATAATGGTTCTGGCACTGATAGTATGATTCAGGGAAAAGTTTCAAAGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCTGTCAAGATTCATCAGCCGGCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAACCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACCGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACCAACGCCTGCTGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCGGAACCAATTTTAGTACGTGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAATATGCATGGAGACAGATTGGGGTACTTGTAG 2001 0.4298 MEAVIGIEDNDDGKLEDSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTSEADLGKLNAKFQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINEKVRSETPYQEAPSIASSLNYSHSNLSGSIDQCSRPSEGVIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITKKCEEECSGNVSAATVISVENMVGEGDVKNKDSCVVEDCGVDDNQVASETRLENLNTEHDLGDDEQQSEQRAAKRMRKPTKRYIEELSENESREYNPRSSTSNKNTGHKHVSPTSHVKPAKNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMGEAAKLGNKVVRDNGSGTDSMIQGKVSKPSSMPVKIHQPVKIHQPATSESGKEKQCPVIVTTEPRQEPRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVNMHGDRLGYL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00717 666 SMART sant 548 601 IPR001005 -
Trre16g00717 666 MobiDBLite consensus disorder prediction 332 398 - -
Trre16g00717 666 MobiDBLite consensus disorder prediction 374 392 - -
Trre16g00717 666 Pfam Myb-like DNA-binding domain 551 599 IPR001005 -
Trre16g00717 666 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 544 603 IPR017930 -
Trre16g00717 666 ProSiteProfiles Myb-like domain profile. 552 599 IPR001005 -
Trre16g00717 666 MobiDBLite consensus disorder prediction 638 666 - -
Trre16g00717 666 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 646 - -
Trre16g00717 666 Gene3D - 539 647 - -
Trre16g00717 666 MobiDBLite consensus disorder prediction 638 657 - -
Trre16g00717 666 CDD SANT_TRF 550 600 - -
Trre16g00717 666 SUPERFAMILY Homeodomain-like 546 606 IPR009057 -
Trre16g00717 666 MobiDBLite consensus disorder prediction 333 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00717 Trre-Chr16 5474041 5479024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00717 552 598 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 3.97e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g00717 Myb_DNA-binding 4.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00717 - - tpra:123883109 1166.76