Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00716 ATGGAAGCAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGACAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATCGAAAGATCATCTTCCGGGAAGCTTCGATTAGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATGTTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGGTCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGAGAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCTATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGATTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAGGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATAACTAAAAAATGCGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGTCGGAGAAGGGGATGTCAAGAATAAGGATTCATGTGTAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAGAATCTTAATACGGAGCATGATTTGGGAGATGATGAACAGCAGAGCGAACAGAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAACTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGTCGTCAACTTCTAACAAAAATACGGGACACAAACATGTTTCTCCAACTTCTCACGTCAAGCCTGCTAAGAATGTTTTACCAGAGGCAAGAACTTTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGGGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGATAATGGTTCTGGCACTGATAGTATGATTCAGGGAAAAGTTTCAAAGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCTGTCAAGATTCATCAGCCGGCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAACCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACCGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACCAACGCCTGCTGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCGGAACCAATTTTAGTACGTGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAATATGCATGGAGACAGATTGGGGTACTTGTAG 2013 0.4292 MEAVIGIEDNDDGKLEDSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTSEADLGKLNAKFQYVEQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINEKVRSETPYQEAPSIASSLNYSHSNLSGSIDQCSRPSEGVIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITKKCEEECSGNVSAATVISVENMVGEGDVKNKDSCVVEDCGVDDNQVASETRLENLNTEHDLGDDEQQSEQRAAKRMRKPTKRYIEELSENESREYNPRSSTSNKNTGHKHVSPTSHVKPAKNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMGEAAKLGNKVVRDNGSGTDSMIQGKVSKPSSMPVKIHQPVKIHQPATSESGKEKQCPVIVTTEPRQEPRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVNMHGDRLGYL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00716 670 ProSiteProfiles Myb-like domain profile. 556 603 IPR001005 -
Trre16g00716 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 548 607 IPR017930 -
Trre16g00716 670 MobiDBLite consensus disorder prediction 336 402 - -
Trre16g00716 670 MobiDBLite consensus disorder prediction 378 396 - -
Trre16g00716 670 Gene3D - 543 651 - -
Trre16g00716 670 SUPERFAMILY Homeodomain-like 550 610 IPR009057 -
Trre16g00716 670 MobiDBLite consensus disorder prediction 642 670 - -
Trre16g00716 670 Pfam Myb-like DNA-binding domain 555 603 IPR001005 -
Trre16g00716 670 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 650 - -
Trre16g00716 670 CDD SANT_TRF 554 604 - -
Trre16g00716 670 MobiDBLite consensus disorder prediction 642 661 - -
Trre16g00716 670 SMART sant 552 605 IPR001005 -
Trre16g00716 670 MobiDBLite consensus disorder prediction 337 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00716 Trre-Chr16 5474041 5479024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00716 556 602 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 3.90e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g00716 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00716 - - tpra:123883109 1180.24