Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00715 ATGGAAGCAGTGATTGGAATTGAGGATAATGATGATGGGAAGCTCGAAGACAGTGGAGTTGATAGAAGCAGTTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATCGAAAGATCATCTTCCGGGAAGCTTCGATTAGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTTCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATGTTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGGTCACCTGTTCGTTCTCATGTACAAATAGATAGCCAGTATTCTGCTGATAATCCTGTCATAAATGAGAAGGTTCGGTCCGAAACTCCTTACCAGGAAGCACCTTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCTATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGATTTTTCCATGACAGACGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAGGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCATGCGATGTTTCAGCAACAACATTCACTGTTAAAGATAACAAAATAACTAAAAAATGCGAAGAAGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGTCGGAGAAGGGGATGTCAAGAATAAGGATTCATGTGTAGTGGAGGATTGCGGAGTTGATGATAACCAAGTCGCTTCTGAAACAAGACTGGAGAATCTTAATACGGAGCATGATTTGGGAGATGATGAACAGCAGAGCGAACAGAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAACTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGTCGTCAACTTCTAACAAAAATACGGGACACAAACATGTTTCTCCAACTTCTCACGTCAAGCCTGCTAAGAATGTTTTACCAGAGGCAAGAACTTTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTCCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGACAAATATCACGTCTCTTATGAAATTTCATCCAACTGGCATGGGTGAGGCTGCAAAATTAGGCAATAAAGTTGTTAGAGATAATGGTTCTGGCACTGATAGTATGATTCAGGGAAAAGTTTCAAAGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCTGTCAAGATTCATCAGCCGGTGAGACTAACCGAGTCTGCTAGTGATAGAATGTCCAAGGCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCAGTAATTGTCACAACCGAACCAAGGCAGGAACCGAGGCCGGAAAAAATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACCGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGTTGAGGTAATGAAATTGATTGAAGGTGTGTCACGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCGCATCGTACCTCTGTTGATCTCAAGGATAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACCAACGCCTGCTGATGAGGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCGGAACCAATTTTAGTACGTGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTCCAGCTCAAGCAAGTTAACAACAACTGGTGGTACAGTGAATATGCATGGAGACAGATTGGGGTACTTGTAG 2052 0.4298 MEAVIGIEDNDDGKLEDSGVDRSSSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTSEADLGKLNAKFQYVEQMLQKVKQEEKLRLSSRSPVRSHVQIDSQYSADNPVINEKVRSETPYQEAPSIASSLNYSHSNLSGSIDQCSRPSEGVIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITKKCEEECSGNVSAATVISVENMVGEGDVKNKDSCVVEDCGVDDNQVASETRLENLNTEHDLGDDEQQSEQRAAKRMRKPTKRYIEELSENESREYNPRSSTSNKNTGHKHVSPTSHVKPAKNVLPEARTFVTRLDSLGGSGVQIPCVSRVRRSRPRTNITSLMKFHPTGMGEAAKLGNKVVRDNGSGTDSMIQGKVSKPSSMPVKIHQPVKIHQPVRLTESASDRMSKATSESGKEKQCPVIVTTEPRQEPRPEKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIEGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNSSSSKLTTTGGTVNMHGDRLGYL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00715 683 Gene3D - 556 664 - -
Trre16g00715 683 MobiDBLite consensus disorder prediction 655 683 - -
Trre16g00715 683 MobiDBLite consensus disorder prediction 336 402 - -
Trre16g00715 683 MobiDBLite consensus disorder prediction 378 396 - -
Trre16g00715 683 ProSiteProfiles Myb-like domain profile. 569 616 IPR001005 -
Trre16g00715 683 SMART sant 565 618 IPR001005 -
Trre16g00715 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 561 620 IPR017930 -
Trre16g00715 683 SUPERFAMILY Homeodomain-like 563 623 IPR009057 -
Trre16g00715 683 MobiDBLite consensus disorder prediction 655 674 - -
Trre16g00715 683 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 663 - -
Trre16g00715 683 Pfam Myb-like DNA-binding domain 568 616 IPR001005 -
Trre16g00715 683 CDD SANT_TRF 567 617 - -
Trre16g00715 683 MobiDBLite consensus disorder prediction 337 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00715 Trre-Chr16 5474041 5479024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00715 569 615 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 3.72e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g00715 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00715 - - tpra:123883109 1199.11