Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00713 ATGAAAAATAGTGAATCCAGTAGTAGGATAAGCTTAGTTCTTTATCTCATTCTCTTGCTTATTTCAAAACCGTCGGGAGTAGCTGCAAGCATAATTCCAAATCCAATTTCAAACAAGCATTATTCTACATATCCTGTGATATTTTCTCCTTCCAGCCTTGTTCCTGACATAAAATATGATGTCTTTGTTAGCTTTCGAGACTATGATATGAACAAGGTGCTAAGCTGGAGATCTGCTTTGAAGCAATCTACCAATATGTCTGGATTTGATTCATTAAATTTTTCGGATGATGCTAAGCTTGTCGAAGAAATAGTTCAAAATGTGTTGACAAAGTTGAATCAAGTGGACCAAGGAAAGTCAAAAGGACTTGTAGGAATTGAAAAGCAAATTTCACCTATAGAATCATTGTTGCATTTAGAGTTGGAAGATGTTCGTGTTCTTGGAATTTGGGGTATGCCTGGTATTGGTAAAACAACTATTACTGAAGAAGTATTTCGTAGACTACATTCTAAATACGAAAGTTATTGTTTTATGGCTAATGTAAGAGAAGAATCAGAAAGATATGGCACAAACAATTTGAGGTTAAGAAACAAGCTTTTATCCACTCTATTAAAGGAAGAAAACTTGAAAGATGACCTTATTAATGGATTACCTCCTTTGGTTAAGAAAAGGCTTCGCCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAAGATGCAGAGCAACTAGAAGTTTTGATTGGAACAGATGAATGGTTAGGACCAGGAAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTAGCCGGAAAAGTTGATGATATCTACGAGGTTGAGCCATTGGACTCTGCTGAATCTTTTCAACTTTTCAATCTGCATGCCTTTACTAAACATGAGCATCTTGAAATAGAGTACTATAAGCTATCAGAGAAGATGGTAGATTATACCAAAGGTGTCCCACTAGTTCTTAAAGCTTTAGCTAACCTTCTTTGTGGGAAAGATAAAGACATATGGGAAAGCCAATCAAGGATTTTGAAAATTGAGCAGATTGAAAATGTCCATGATGTTTTCAGATTGATATACACTAATCTTGATTATCATGAGAAGAATATATTCTTGGATATTGCCTGCTTTTTTGATGGATTGAAATTGAATCTTGACCTCATAAAACTTCTATTGAAAGATCGTCATTATTCCGTGAGCACTAAATTAGACAGGCTGAAAGATAAAGCTCTTGTAACTATTTCTCAACAAAGCATTGTATCAATGCATGACATTATACAAGAAACTGCTTGGGAAATTGTACGACAGGAATCTGTTGAAGAACCTGGAAGCCGAAGCCGACTATTTGATCCTGATGACATTTATCATGTATTGAAAGATGACAAGGGAAGTGAAGCCATCAGAAGTATGGCCATTAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCCAAGATGAGCAAGTTGAAATTTTTGGATATTTACACTAAGGGGTCTCCAAATGAAGGTAGTTTGTCTCTTCCTCGAGGGCTTGAATTTTTGCCTAATGAACTGAGATATCTTCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTACAGAAAACCTTGTTACATTGAGCTTGCCTTATAGCCGATTGAAAAAACTTTGGCATGGAGTGAAAGATCTTGGGAATTTGAATGTCCTGATACTCCATTCATCCACACTCCTAACAGAGCTGCCAGACTTTTCAAAGGCCACAAGTATTGCAATAATGGACCTTCATTTCTGTGTAGGGTTGACTAGTGTCCATCCATCTGTTTTCTCTCTCAAAAAGCTAAAGAAACTGGATCTGAGTGGATGTGTTTCCCTTACAAGCCTTCAAAGCAATAATACCCATTTAAGTTCCCTTAGTTATCTCTCCCTCTACAACTGCACATCACTGAAGGAATTTTCAGTGACCTCGAAGAATATGAACGAACTGAATTTAGAACTCACAAGTATCAAAGAACTACCCTCATCAATTGGACTTCAAACCAAGCTTGAAAAGTTACATCTCGGACACACTCACATTGAGAGCTTGCCTAGGAGCATCAAGAATCTTACAAGTTTGAAACAACTAGGCTTACATCATTGCAGAGAGCTTCAAACTCTACCGGAGCTACCTCTATCGCTAGAAATACTAGCTGCTATTGGTTGTGTATCACTAGAGAATGTAGTCTTCGGTTCAACTGCTAGTGAACAACTTAAGGAAAAGAGGAAAAGGGTTACCTTCTGGAATTGCCTTAAACTAAATGAGCCTTCTCTCAAGGCTATTGGGTTGAATGCTCAAATTAACATGATGAGCTTTTCACACAAACATATATCCACATGCGATCGTAATCGTGATCGTCATCATGATCATGATCACGATCTTAATCAACACATGTATGTGTATCCAGGTAGCAAAATTCCAGAGTGGTTGGAATATAGTACAACTACAAATGATTTCATAACTATTGATCTTTCTTCTGCTCCTTATTTCTCTAAGTTGGGCTTCATTTTTGGCTTCATCATTCCAACCATCTCATCAGAGGGTTCAATTCTTAAATTCAAAATCAGTGATTGTGATGGTGAAGATGAAGGTATTAAAGTGTACTTGGACAGACCACACCATGGAATTGAATCGGATCATGTGTATCTAATGTATGACCCAAGATTGTCTCATTACCTAGCTAGCCGAGTCAATGATTGGTCAATGATTAAAATTCAGGTTAGAGCATCATCAAGAACACCAACATCACAATACATGCCAGTGCAGTTAAGAGGGTTTGGGGTTAGCCTAGTAACTCCTTCACTATATGACAAGTTTAAACAGCAGTTGGAATTTGGTGATGGAATCGTTGTTCCAGATAATACATGTTCGGTGGAAGAAAGATCGATGTTTACAGGAATTTAA 2946 0.3727 MKNSESSSRISLVLYLILLLISKPSGVAASIIPNPISNKHYSTYPVIFSPSSLVPDIKYDVFVSFRDYDMNKVLSWRSALKQSTNMSGFDSLNFSDDAKLVEEIVQNVLTKLNQVDQGKSKGLVGIEKQISPIESLLHLELEDVRVLGIWGMPGIGKTTITEEVFRRLHSKYESYCFMANVREESERYGTNNLRLRNKLLSTLLKEENLKDDLINGLPPLVKKRLRRMKVLIVLDDVKDAEQLEVLIGTDEWLGPGSRIIITTRDKQVLAGKVDDIYEVEPLDSAESFQLFNLHAFTKHEHLEIEYYKLSEKMVDYTKGVPLVLKALANLLCGKDKDIWESQSRILKIEQIENVHDVFRLIYTNLDYHEKNIFLDIACFFDGLKLNLDLIKLLLKDRHYSVSTKLDRLKDKALVTISQQSIVSMHDIIQETAWEIVRQESVEEPGSRSRLFDPDDIYHVLKDDKGSEAIRSMAIRLSEIKELQLSPQVFAKMSKLKFLDIYTKGSPNEGSLSLPRGLEFLPNELRYLRWEYYPLESLPSKFSTENLVTLSLPYSRLKKLWHGVKDLGNLNVLILHSSTLLTELPDFSKATSIAIMDLHFCVGLTSVHPSVFSLKKLKKLDLSGCVSLTSLQSNNTHLSSLSYLSLYNCTSLKEFSVTSKNMNELNLELTSIKELPSSIGLQTKLEKLHLGHTHIESLPRSIKNLTSLKQLGLHHCRELQTLPELPLSLEILAAIGCVSLENVVFGSTASEQLKEKRKRVTFWNCLKLNEPSLKAIGLNAQINMMSFSHKHISTCDRNRDRHHDHDHDLNQHMYVYPGSKIPEWLEYSTTTNDFITIDLSSAPYFSKLGFIFGFIIPTISSEGSILKFKISDCDGEDEGIKVYLDRPHHGIESDHVYLMYDPRLSHYLASRVNDWSMIKIQVRASSRTPTSQYMPVQLRGFGVSLVTPSLYDKFKQQLEFGDGIVVPDNTCSVEERSMFTGI 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00713 981 SUPERFAMILY L domain-like 474 792 - -
Trre16g00713 981 PRINTS Disease resistance protein signature 317 331 - -
Trre16g00713 981 PRINTS Disease resistance protein signature 611 627 - -
Trre16g00713 981 PRINTS Disease resistance protein signature 224 238 - -
Trre16g00713 981 PRINTS Disease resistance protein signature 146 161 - -
Trre16g00713 981 Gene3D - 110 275 IPR027417 -
Trre16g00713 981 SUPERFAMILY "Winged helix" DNA-binding domain 354 461 IPR036390 -
Trre16g00713 981 Pfam NB-ARC domain 141 352 IPR002182 GO:0043531
Trre16g00713 981 Pfam Leucine Rich Repeat 545 564 IPR011713 -
Trre16g00713 981 Gene3D - 282 366 IPR042197 -
Trre16g00713 981 Gene3D Ribonuclease Inhibitor 394 759 IPR032675 -
Trre16g00713 981 Gene3D - 66 109 IPR035897 -
Trre16g00713 981 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 67 742 IPR044974 GO:0006952
Trre16g00713 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 376 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00713 Trre-Chr16 5463821 5469106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00713 44 731 WRKY Transcription Factor Family AT4G12020 37.749 1.59e-116 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00713 - - tpra:123883104 1666.36