Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00712 ATGGACTCACGCACACAGTATAATTCTTATACCGTTGAAGATGTCTTTCAAGATTTTAAGGGCCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGATGATTTGTATAACCAATGCGATCCCGACAAGGAAAATCTGTGTTTGTATGGGTTTCCTGATGAGGAGTGGAAAGTCACTTTACCTGCTGAAAATATTCCATCTGAGCTTCCCGAGCCTTCCCTGGGCATTAACTTTGCTAGGTCTGGAATGCGAAAAACAGATTGGCTGTCCTTAGTTGCCACTCATAGCGATTCATGGTTATTTGGTGTTGCATCCTATTATGGATATGGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGGAAGTTGTTGATGCTGCGGAAGTTGTGACTGATGCTGCAAAGAAACAAGTTGAGGAGAAATCCAAGTCCAACTCGATAGCGGCTCCAGAATCCCAGGTCAAGGAACTGGAGGAGGAGGACGATGAAAGTATACTATGTGAAGTATGCAGTATGCACTACGGACAAGACACTTTTTGGATTTTCTGCGATTTTTGTGAGCACTGGTATCACGGCAAGTGTGTAGAGGTTACACCTGACATGGCCGATGTTATCAATGAATACAAGTGTCCGTTTTGTCGGATAAAATTTGATTGA 690 0.4348 MDSRTQYNSYTVEDVFQDFKGRRAGLIKALTTDADDLYNQCDPDKENLCLYGFPDEEWKVTLPAENIPSELPEPSLGINFARSGMRKTDWLSLVATHSDSWLFGVASYYGYGFNKSDRERLFSMINELPTILEVVDAAEVVTDAAKKQVEEKSKSNSIAAPESQVKELEEEDDESILCEVCSMHYGQDTFWIFCDFCEHWYHGKCVEVTPDMADVINEYKCPFCRIKFD 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00712 229 Pfam PHD-finger 178 226 IPR019787 -
Trre16g00712 229 SMART PHD_3 177 225 IPR001965 -
Trre16g00712 229 Pfam Alfin 11 135 IPR021998 GO:0006355|GO:0042393
Trre16g00712 229 ProSiteProfiles Zinc finger RING-type profile. 178 225 IPR001841 -
Trre16g00712 229 ProSiteProfiles Zinc finger PHD-type profile. 175 227 IPR019787 -
Trre16g00712 229 PANTHER CPG BINDING PROTEIN 8 226 IPR045104 GO:0006355|GO:0042393
Trre16g00712 229 SUPERFAMILY FYVE/PHD zinc finger 169 227 IPR011011 -
Trre16g00712 229 ProSitePatterns Zinc finger PHD-type signature. 178 224 IPR019786 -
Trre16g00712 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 225 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00712 Trre-Chr16 5455637 5459928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00712 7 227 Alfin-like Transcription Factor Family AT3G42790 51.464 1.10e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre16g00712 Alfin 4.5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00712 K26274 - gmx:100170700 299.671