Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00711 ATGATGATTGTGCAAGGCAGAAGTAAGATATTTGTTAGATATTGTGCTCCTGCCTATAATCGGAAAATTACATCCATCTGGGCATTTATGGAAAACAACAAGCAAAATACTTATTTCACAGTTCGTTTGAGAAGAATACCAGGAGAAGCTACAATGGACTCACGCACACAGTATAATTCTTATACCGTTGAAGATGTCTTTCAAGATTTTAAGGGCCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGATGATTTGTATAACCAATGCGATCCCGACAAGGAAAATCTGTGTTTGTATGGGTTTCCTGATGAGGAGTGGAAAGTCACTTTACCTGCTGAAAATATTCCATCTGAGCTTCCCGAGCCTTCCCTGGGCATTAACTTTGCTAGGTCTGGAATGCGAAAAACAGATTGGCTGTCCTTAGTTGCCACTCATAGCGATTCATGGTTATTTGGTGTTGCATCCTATTATGGATATGGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGGAAGTTGTTGATGCTGCGGAAGTTGTGACTGATGCTGCAAAGAAACAAGTTGAGGAGAAATCCAAGTCCAACTCGATAGCGCTGCAGGCTCCAGAATCCCAGGTCAAGGAACTGGAGGAGGAGGACGATGAAAGTATACTATGTGAAGTATGCAGTATGCACTACGGACAAGACACTTTTTGGATTTTCTGCGATTTTTGTGAGCACTGGTATCACGGCAAGTGTGTAGAGGTTACACCTGACATGGCCGATGTTATCAATGAATACAAGTGTCCGTTTTGTCGGATAAAATTTGATTGA 849 0.4229 MMIVQGRSKIFVRYCAPAYNRKITSIWAFMENNKQNTYFTVRLRRIPGEATMDSRTQYNSYTVEDVFQDFKGRRAGLIKALTTDADDLYNQCDPDKENLCLYGFPDEEWKVTLPAENIPSELPEPSLGINFARSGMRKTDWLSLVATHSDSWLFGVASYYGYGFNKSDRERLFSMINELPTILEVVDAAEVVTDAAKKQVEEKSKSNSIALQAPESQVKELEEEDDESILCEVCSMHYGQDTFWIFCDFCEHWYHGKCVEVTPDMADVINEYKCPFCRIKFD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00711 282 Pfam PHD-finger 231 279 IPR019787 -
Trre16g00711 282 SUPERFAMILY FYVE/PHD zinc finger 222 280 IPR011011 -
Trre16g00711 282 ProSitePatterns Zinc finger PHD-type signature. 231 277 IPR019786 -
Trre16g00711 282 SMART PHD_3 230 278 IPR001965 -
Trre16g00711 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 278 IPR013083 -
Trre16g00711 282 Pfam Alfin 62 186 IPR021998 GO:0006355|GO:0042393
Trre16g00711 282 ProSiteProfiles Zinc finger RING-type profile. 231 278 IPR001841 -
Trre16g00711 282 ProSiteProfiles Zinc finger PHD-type profile. 228 280 IPR019787 -
Trre16g00711 282 PANTHER CPG BINDING PROTEIN 59 279 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00711 Trre-Chr16 5455637 5461508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00711 58 280 Alfin-like Transcription Factor Family AT3G42790 53.138 3.91e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre16g00711 Alfin 7.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00711 K26274 - gmx:100170700 304.293