Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00710 ATGATGATTGTGCAAGGCAGAAGTAAGATATTTGTTAGATATTGTGCTCCTGCCTATAATCGGAAAATTACATCCATCTGGGCATTTATGGAAAACAACAAGCAAAATACTTATTTCACAGTTCGTTTGAGAAGAATACCAGGAGAAGCTACAATGGACTCACGCACACAGTATAATTCTTATACCGTTGAAGATGTCTTTCAAGATTTTAAGGGCCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGCTGATGATTTGTATAACCAATGCGATCCCGACAAGGAAAATCTGTGTTTGTATGGGTTTCCTGATGAGGAGTGGAAAGTCACTTTACCTGCTGAAAATATTCCATCTGAGCTTCCCGAGCCTTCCCTGGGCATTAACTTTGCTAGGTCTGGAATGCGAAAAACAGATTGGCTGTCCTTAGTTGCCACTCATAGCGATTCATGGTTATTTGGTGTTGCATCCTATTATGGATATGGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGGAAGTTGTTGATGCTGCGGAAGTTGTGACTGATGCTGCAAAGAAACAAGTTGAGGAGAAATCCAAGTCCAACTCGATAGCGGCTCCAGAATCCCAGGTCAAGGAACTGGAGGAGGAGGACGATGAAAGTATACTATGTGAAGTATGCAGTATGCACTACGGACAAGACACTTTTTGGATTTTCTGCGATTTTTGTGAGCACTGGTATCACGGCAAGTGTGTAGAGGTTACACCTGACATGGCCGATGTTATCAATGAATACAAGTGTCCGTTTTGTCGGATAAAATTTGATTGA 843 0.4211 MMIVQGRSKIFVRYCAPAYNRKITSIWAFMENNKQNTYFTVRLRRIPGEATMDSRTQYNSYTVEDVFQDFKGRRAGLIKALTTDADDLYNQCDPDKENLCLYGFPDEEWKVTLPAENIPSELPEPSLGINFARSGMRKTDWLSLVATHSDSWLFGVASYYGYGFNKSDRERLFSMINELPTILEVVDAAEVVTDAAKKQVEEKSKSNSIAAPESQVKELEEEDDESILCEVCSMHYGQDTFWIFCDFCEHWYHGKCVEVTPDMADVINEYKCPFCRIKFD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00710 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 276 IPR013083 -
Trre16g00710 280 ProSiteProfiles Zinc finger RING-type profile. 229 276 IPR001841 -
Trre16g00710 280 Pfam PHD-finger 229 277 IPR019787 -
Trre16g00710 280 ProSiteProfiles Zinc finger PHD-type profile. 226 278 IPR019787 -
Trre16g00710 280 SUPERFAMILY FYVE/PHD zinc finger 220 278 IPR011011 -
Trre16g00710 280 ProSitePatterns Zinc finger PHD-type signature. 229 275 IPR019786 -
Trre16g00710 280 PANTHER CPG BINDING PROTEIN 59 277 IPR045104 GO:0006355|GO:0042393
Trre16g00710 280 SMART PHD_3 228 276 IPR001965 -
Trre16g00710 280 Pfam Alfin 62 186 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00710 Trre-Chr16 5455637 5461508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00710 58 278 Alfin-like Transcription Factor Family AT3G42790 51.464 4.44e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre16g00710 Alfin 7.6e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00710 K26274 - gmx:100170700 299.671