Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00709 ATGGTCAGATCGATAGCTTTTTTTATATTCCTTTTGCTTGTTTCAACAATATTATTAATGGGGGAAACTGAAGCAAAAAAAACAGCAGCTGAAGCTAAATCTTATGATGTCTTTCTCACCTTTAGGGGATCCGATATTAGATTAGATTTTCAAAGTCATTTAAGTGATGCCCTAAGACAAAAGCAAATTGTTGTTTTTATAGATGATCAGATACCCGAAGGAGATGAAATAGCACAGTCACTTTTTCAAGCAATTGACAAATCTTTGATATCTTTAGTCATATTTTCACCCAATTACGTGAAATCCGACTGGTGTATGAGTGAACTGGTTAGAATTGTTGAATGCAGAAAAAAAGTTAGTCAGGTTTTATTGCCTGTTTTCTATAAAGTCGATCCAAGTGATGTAAGATGGCAAAAGGGTCCGTACGCAGATCCATTTACAGAACATGAAAAACAGTACAATTTGACCACGGTGAAAAAGTGGCGATCTGCTTTGACCGAATCTGCTAGTATCGTTGGATTTCATTCATCACTCTTTAAGGATGAAGCTGTGCTTATTAAAAAAATAGTTCAACGTGTGTTGAGGAAATTGGATGATATTCACAAGGACAAAGCTCGATCAAAACGAGGACTTATCAGGCTTGAAAATCAAATTTCACATGTGGAATCATTGTTAATGGCAGACTCTAAAGATGTTCGCGCCATTGGCATTTGGGGTATGCTTGGTATTGGTAAAACAACTATTGCAGAGGAAGTATATAACAGGCAACGTTCTAAATATGATGCTTGTTACTTTAAGGCTAAAGTTAGAGAAGAATGGAGGAGACATGGAAGTATGAATTTAAAGAATGAGCTTTTTTCTACATTATTAGGGCAACAGGATTTGAAAATTTACACAGCACATGGTTTGCCCGATTTTGTTGATCAGAGCTGGAGGTTTCCTCGTATAAAGGTTCTTGTTGTTCTTGATGATGTCAATGATCAACAACAACTAGAAATTTTAATTGGATCGACATTTGATAGGTTTCGAAGAGGTAGTAGAATCATCATAACTACAAGAGATAAGCAAGTACTCACCAAAAGGGTTGATGATAATGATGTATATGAGGTTAAGCCATTGGACTTTCAGGACTCTTTTCGGCTTTTCATATTGACTCTCTCCGAACAAAACCATTCTGAAATGAACTTCTATCAAGAGCATGAGTTATCAAAGAAGGTGGTCAATTATGGCAAAGGTATTCCATTAGTTCTTAAAGAACTAGGTTATTTTCTTGGTGGAAAAGATAAAAGTACATGGAAAAGCCAATTTGAGAAGCTTAAAAGAGTGCCACTACTGAAAAATGTCCATGATGCAATTAGATTGAGTTGTGAAGATCTCAGTCGTGTTGAGAAGAAGGTGTTGTTGGATATTGCATCTCTTTCAGATGGATTGTATTTGAAAGTTGACAACATACGACTGCTGATGAATGTTGACAACATACAACTTTTGTTGAAAGATGTCGATGATTACAATTTGGTGGATGTTTTACAAAGTCTGAGAAATAAGGCTCTTCTATCTATTTCTCAACATAATGTTGTATCAATGCATAGCATCATACAAGTAACGGCTCGTGAAATTGTTCGTGAAGAATCTAATGAAGACCAAGGAAAGCAAAGTGATCAATTATTGGAACCTATTGAAAAGGGCTGTGTATCATTGAAGACTGTAAGTTTCCCATCAACTGCTGTTCAAATATTAACGGAAAGCAAGACAAGGGTTTTCTTATGGAATTGCCTGAAACTAGATGAACCTTCTCTCAATGCTATTGGGTTGAATGCACGTATTAACATGATGAATTTTGCATTTAGAAATCATTATGATTCACAAGCTACATATGTGTACCCAGGAAGCAATGTTCCAGCATGGTTGGAATATAAGACAACAAGTGATTATATGACTATTGATCTCTCACAATATTCGTTTGATCATTTGGGCTTTATTTTTTGCTTCATTGTTCCAGAAGTTGAATCACATGGTTCCATTTTGAGATTTAACATTGCTATAATTGGCTGTGAAGATGAATACATCCAAGTGTACTTGGATAGAACAAGTCATGGAATCCAATCAGATCATGTTTATTTAATGTGCAACCGAGTTTTGTCCCGCTATATAATAAGCCGACTTAAAAATCAGCCAAAATTGGAAATGAGGGTTACAGCAGAAACAGGAACACTGACATCAGAGTATGTACCATTAATGCTGCTCAAAGGTTTTGGGATCAGTCCAGTAAACACTTCACAATATAACCATTTCAGTGAACAAATGGAATTGGATGATGGTCCAAGTCTTATTCTACCACTAATTGTTGTTTTTGTTAGTTTTGTTATTTGGAATTTTAGTATTTCTTGA 2388 0.3551 MVRSIAFFIFLLLVSTILLMGETEAKKTAAEAKSYDVFLTFRGSDIRLDFQSHLSDALRQKQIVVFIDDQIPEGDEIAQSLFQAIDKSLISLVIFSPNYVKSDWCMSELVRIVECRKKVSQVLLPVFYKVDPSDVRWQKGPYADPFTEHEKQYNLTTVKKWRSALTESASIVGFHSSLFKDEAVLIKKIVQRVLRKLDDIHKDKARSKRGLIRLENQISHVESLLMADSKDVRAIGIWGMLGIGKTTIAEEVYNRQRSKYDACYFKAKVREEWRRHGSMNLKNELFSTLLGQQDLKIYTAHGLPDFVDQSWRFPRIKVLVVLDDVNDQQQLEILIGSTFDRFRRGSRIIITTRDKQVLTKRVDDNDVYEVKPLDFQDSFRLFILTLSEQNHSEMNFYQEHELSKKVVNYGKGIPLVLKELGYFLGGKDKSTWKSQFEKLKRVPLLKNVHDAIRLSCEDLSRVEKKVLLDIASLSDGLYLKVDNIRLLMNVDNIQLLLKDVDDYNLVDVLQSLRNKALLSISQHNVVSMHSIIQVTAREIVREESNEDQGKQSDQLLEPIEKGCVSLKTVSFPSTAVQILTESKTRVFLWNCLKLDEPSLNAIGLNARINMMNFAFRNHYDSQATYVYPGSNVPAWLEYKTTSDYMTIDLSQYSFDHLGFIFCFIVPEVESHGSILRFNIAIIGCEDEYIQVYLDRTSHGIQSDHVYLMCNRVLSRYIISRLKNQPKLEMRVTAETGTLTSEYVPLMLLKGFGISPVNTSQYNHFSEQMELDDGPSLILPLIVVFVSFVIWNFSIS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00709 795 Gene3D - 31 200 IPR035897 -
Trre16g00709 795 PRINTS Disease resistance protein signature 410 424 - -
Trre16g00709 795 PRINTS Disease resistance protein signature 312 326 - -
Trre16g00709 795 PRINTS Disease resistance protein signature 234 249 - -
Trre16g00709 795 Gene3D - 373 460 IPR042197 -
Trre16g00709 795 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 174 IPR035897 -
Trre16g00709 795 ProSiteProfiles TIR domain profile. 33 197 IPR000157 GO:0007165
Trre16g00709 795 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 576 IPR044974 GO:0006952
Trre16g00709 795 SMART till_3 34 171 IPR000157 GO:0007165
Trre16g00709 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 470 IPR027417 -
Trre16g00709 795 Pfam NB-ARC domain 216 443 IPR002182 GO:0043531
Trre16g00709 795 Gene3D - 201 367 IPR027417 -
Trre16g00709 795 FunFam Disease resistance protein (TIR-NBS-LRR class) 31 199 - -
Trre16g00709 795 Pfam TIR domain 35 203 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00709 Trre-Chr16 5433754 5452147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00709 30 552 WRKY Transcription Factor Family AT4G12020 31.689 2.68e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00709 - - tpra:123883108 541.576