Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00705 ATGGCTTTTTCTTCACAATATAAAGAAATGTATGTCCTCCCTGGGATTATAATCATTGGATCAATTGTAATTGCTTTTATATTTTTCAGACTCACAATGCAAGGATGGTGCAACCTTATCAATCATGAACCTACCCTTCCTACAACAGTCATATCTTATGATGCCAAATTTTCTGCTTGCAAGAGTTTAGAGTCACATTCAATCACCTTCATGTACAAGGAAGGTGATGCTGCACAACAAGGCATAAACCAGACGGAATGTGTTATCTGTTTAACTGTCTTTCAAGAAGACGAAAGTGTTCGGAAACTTCATAGTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTGGTTCTCATTCGGGATGTCCGTTATGTCGCTCTAAGATTGATCAAGTAACTTCTACAAACGGATCATTTGCAAATGATCGGATGATTGTGGACATTGTTGAGTCCAGAATTTGA 471 0.3779 MAFSSQYKEMYVLPGIIIIGSIVIAFIFFRLTMQGWCNLINHEPTLPTTVISYDAKFSACKSLESHSITFMYKEGDAAQQGINQTECVICLTVFQEDESVRKLHSCKHVFHTSCIDKWLGSHSGCPLCRSKIDQVTSTNGSFANDRMIVDIVESRI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00705 156 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 133 IPR044675 -
Trre16g00705 156 Pfam Ring finger domain 86 129 IPR001841 -
Trre16g00705 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
Trre16g00705 156 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Trre16g00705 156 SMART ring_2 87 128 IPR001841 -
Trre16g00705 156 SUPERFAMILY RING/U-box 86 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00705 Trre-Chr16 5399796 5400266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00705 66 143 C3H Transcription Factor Family AT1G72220 48.101 1.31e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00705 - - mtr:25500542 232.261