Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00700 ATGTTGACTTGCATAGCTTGTTCTAAGCATCTCAATAATGGATCTCTTCCTCAACATGAAGAGAATGAAGCTGTGCAAACACCTAGCACCAAACAAGCCATCAAAGCTCTCACTTCTCAGATCAAGGACATGGCAGTGAAGGCTTCTGGAGCCTATAAGAATTGTAAGCCTTGTTCAGGATCTTCCAATGGTAACAAGAACAAAAAGTATGCTGATTCTGATATGGGATCAGATTCAGCAAGGTTCAACTGGGCATACCGAAGAACTGGGAGTGCGAGTTCTACACCTAGAATGTGGGGGAAGGAAATGGAATCTAGACTCAAAGGGATTTCGAGTGGAGAAGGAACACCAACATCGGTGAGTGGACGTACCGAGTCAGTTGTGTTCATGGAAGAAGAGGATGAACCTAAGGAATGGGTTGCACAAGTTGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCCCAAGGTGGGAATGATCTAAAGAGGATACGGTTCAGCCGTGAAATGTTTAATAAATGGCAAGCTCAGAGATGGTGGGCAGAGAACTATGACAAGGTTATGGAGTTATACAATGTTCAAAGGTTCAATCAACAAGCAGTTCCTCTCCCAACCCCACCCAGATCTGAAGATGAGAGTTCAAAGATTGAATCTGCAAGGGACAGCCCTGTCACACCTCCTCTCAGCAAAGAGCGTCTGCCTCGTCACATTCACCACCAAATGGGAATGGGCTACTCCTCATCGGATTCACTGGATCACCACCATATGCAACCTCAGCCTTTCTATGAAACAAGCCGTCTGGCTTCAAAACCCAATCTTTCTAACATTGGTGTGTCAAAGACCGAAAGATCATCCATTGATGCTTCTGTAAGGACGAGTTCCTCGGGAGATGAAGAAGATCACTCTGGTGAGCTCTCAATCAGCAATGCCAGTGATATGGAAACCGAGTGGGTTGAACAGGATGAACCGGGAGTATATATCACTATCAGAGCACTACCAGGTGGAACCCGAGAACTTAGGCGCGTCCGCTTCAGCCGAGAGAAGTTTGGAGAAATGCATGCCAGATTGTGGTGGGAGGAGAACCGTGCGAGGATACAAGAGCAATACTTGTGA 1113 0.4618 MLTCIACSKHLNNGSLPQHEENEAVQTPSTKQAIKALTSQIKDMAVKASGAYKNCKPCSGSSNGNKNKKYADSDMGSDSARFNWAYRRTGSASSTPRMWGKEMESRLKGISSGEGTPTSVSGRTESVVFMEEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERLPRHIHHQMGMGYSSSDSLDHHHMQPQPFYETSRLASKPNLSNIGVSKTERSSIDASVRTSSSGDEEDHSGELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQYL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00700 370 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Trre16g00700 370 Pfam Transcription factor BRX N-terminal domain 23 58 IPR027988 -
Trre16g00700 370 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 370 IPR044532 -
Trre16g00700 370 MobiDBLite consensus disorder prediction 262 292 - -
Trre16g00700 370 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
Trre16g00700 370 Pfam Transcription factor regulating root and shoot growth via Pin3 314 369 IPR013591 -
Trre16g00700 370 ProSiteProfiles BRX domain profile. 315 370 IPR013591 -
Trre16g00700 370 MobiDBLite consensus disorder prediction 200 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00700 Trre-Chr16 5345716 5348694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00700 1 370 Major Intrinsic Protein MIP AT1G31880 49.100 6.27e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00700 - - gmx:100805480 665.611