Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00697 ATGAGTGGTTTGCCACAACAATGTCATAACAATTTTCTATTTCAAGACCAAGATTCTTCTTCTACACAATCAACTGGTCAATCTTATATGGAAGTTGGTTCGAGACAATTAGGTCCAATTTCTGTCAAGGATAGCAATTTTTATGCTTGTTCAACACTTAGCAAAACTGCAGAGAGTCGCGATTTTACTTTGCCGCCGTCTCAACTGAATCACAACCAATCACATGCTCATGTTGAATTCCCTCATGCTGAGGCATGCTTTAGTGGCCTACTAGCAGCTCCATATGGACCACAGAGTAATTTAGTAGGAACGGCCCCGGTTCGAATTCCTCTACCTCCTGATCTTTGTGAGGAGCCAATATATGTGAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACGGTATCGTGCAAAGCTGGAAGCACAGAACAAACTCATAAAAAATCGGAAACCGTATCTACACGAGTCACGCCATCTGCATGCATTGAAGAGAGCTAGAGGTTCCGGTGGACGTTTTCTAAATACCAAAGAGCTCCAAGACCATGACTTTAATGTTTCCACCACTACTCGGCTGAATCCTAGTGGAAATATTTCGGAATCTAAGGTACATCAAGCAGAAAACTATAGAGACGGTACTTCTACAACCACATGTTCTGATATCACGAGCGCTTCTAATAGTGATGACATGTTACAACAAGACGAATCCAACTTCAGATCATGTGGTTACCCTTTTCATATGCAGAGGTTTCTCGACTGA 759 0.4203 MSGLPQQCHNNFLFQDQDSSSTQSTGQSYMEVGSRQLGPISVKDSNFYACSTLSKTAESRDFTLPPSQLNHNQSHAHVEFPHAEACFSGLLAAPYGPQSNLVGTAPVRIPLPPDLCEEPIYVNAKQYHAIMRRRRYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGSGGRFLNTKELQDHDFNVSTTTRLNPSGNISESKVHQAENYRDGTSTTTCSDITSASNSDDMLQQDESNFRSCGYPFHMQRFLD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00697 252 ProSiteProfiles NF-YA/HAP2 family profile. 116 176 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 MobiDBLite consensus disorder prediction 187 215 - -
Trre16g00697 252 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 233 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 SMART cbf3 115 176 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 PRINTS CCAAT-binding transcription factor subunit B signature 119 141 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 PRINTS CCAAT-binding transcription factor subunit B signature 150 173 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 ProSitePatterns NF-YA/HAP2 subunit signature. 121 141 IPR018362 GO:0003677|GO:0016602
Trre16g00697 252 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 118 173 IPR001289 GO:0003700|GO:0006355
Trre16g00697 252 Gene3D - 116 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00697 Trre-Chr16 5309908 5311881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00697 11 241 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.418 3.04e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre16g00697 CBFB_NFYA 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00697 K08064 - gmx:100500765 310.842