Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00695 ATGGACTCGCGCACACAGTATAATCCTCGCACCGTCGAAGAAGTTTTCAGAGATTTCAAAGGCCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATCTATGCCTGTACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCTGAAGAAGTTCCACCTGAGCTTCCTGAGCCTGTGCTCGGCATTAACTTTGCTAGGGATGGCATGCAAGATAAAGATTGGCTATCTTTGGTTGCTGTTCATAGTGATTCATGGTTAATTGCCATTGCCTACTACTTTGGAGCCAGATTTGGTTTTGACAAATCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCGTCAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTTAAACAACAGTGGCAGCAAATCCAAGTCCAACTCGAAAGCGCGAGCTCCAGAACCCCAGGTGAAGCAGACGAAGGCATTGGAACCCAAAGACGAGGAAGACGAACTGGAGGAGGAAGATGAAGATGAACATGGAGATACTTTATGCGGTGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAGCAACAAGAGAGCTCGCCCTTGA 765 0.4471 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQDKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGAAKKQVKEKSSVLNNSGSKSKSNSKARAPEPQVKQTKALEPKDEEDELEEEDEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRARP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00695 254 MobiDBLite consensus disorder prediction 147 169 - -
Trre16g00695 254 Pfam PHD-finger 200 248 IPR019787 -
Trre16g00695 254 MobiDBLite consensus disorder prediction 182 196 - -
Trre16g00695 254 MobiDBLite consensus disorder prediction 147 196 - -
Trre16g00695 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Trre16g00695 254 FunFam PHD finger alfin-like protein 192 248 - -
Trre16g00695 254 SMART PHD_3 199 247 IPR001965 -
Trre16g00695 254 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Trre16g00695 254 CDD PHD_AL_plant 199 249 IPR044104 -
Trre16g00695 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Trre16g00695 254 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Trre16g00695 254 SUPERFAMILY FYVE/PHD zinc finger 189 249 IPR011011 -
Trre16g00695 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00695 Trre-Chr16 5301340 5306250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00695 7 253 Alfin-like Transcription Factor Family AT3G42790 73.279 6.78e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre16g00695 Alfin 8.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00695 K26274 - gmx:100794662 440.654