Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00693 ATGGACATGGGTAGTGTGGCTGAGGATGAATCAGAGGAAGAGATTCATGTTCCAGCTGAAATTGATTGGCAAATGCTTGATAAATCGAAGTTTTTCTTCCTCGGTGCTGCTTTGTTTTCTGGTGTTTCAGCAACATTGTATCCTGTTGTTGTGTTGAAAACTAGGCAGCAAGTTGCTCAATCACAAGTTTCTTGTATTAAGACGGCGTTTTCGTTGATTAAAGGTGAGGGATTTAGAGCGTTGTATCGCGGATTTGGTACTTCTTTGATGGGTACTATCCCTGCTAGAGCTTTATACATGGCTGCACTTGAGGTTACTAAGAGTAATGTTGGGACTGCTACTGTTGGTTTAGGTCTTGCTGAACCGACTGCTGCTGCGATTGCGAATGCAGTTGCTGGTTTGACTGCAGCTTTGGCAGCTCAACTTGTGTGGACACCGGTTGATGTTGTGAGCCAAAGGTTGATGGTTCAAGGTGGTTGTAATTCAAGTGATCCTAAGGGCTCATCTGTTAGGTATGCTAATGGGATTGATGCATTTAGGAAAATTGTGAGGACAGATGGTCCTAGGGGTTTGTATAGAGGTTTTGGGATATCGGTTGTGACGTATGCGCCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAAAGGATGGTTTGGGGTGGAGTTGGATATTACTTGAGTAACAAGAAAGGTGGGGAGGGTAGCGATAGATCTATCAATGGGGCTAATGTGTTGAGGCCGGATACAAAAACGGTTATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCGGGAGGCATGTCTGCTTTGATTACTATGCCGTTGGATACAATCAAGACAAGGTTGCAGGTCTTGGATGGCGATGAGAATGGCCGTCGTGGACCGACGGTGATGCAGACAGTTAGAAGTTTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCTGTGTCTGCAACAACAATGATCACAACATATGAGTTCCTTAAACGGCTTTCTGCAAAGAATCAAGAGGTTTTGACATGA 1056 0.4498 MDMGSVAEDESEEEIHVPAEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCIKTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVGLGLAEPTAAAIANAVAGLTAALAAQLVWTPVDVVSQRLMVQGGCNSSDPKGSSVRYANGIDAFRKIVRTDGPRGLYRGFGISVVTYAPSNAVWWASYSVAQRMVWGGVGYYLSNKKGGEGSDRSINGANVLRPDTKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSVSATTMITTYEFLKRLSAKNQEVLT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00693 351 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Trre16g00693 351 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
Trre16g00693 351 PRINTS Mitochondrial carrier protein signature 262 284 IPR002067 GO:0055085
Trre16g00693 351 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Trre16g00693 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 219 IPR018108 -
Trre16g00693 351 Pfam Mitochondrial carrier protein 257 346 IPR018108 -
Trre16g00693 351 Pfam Mitochondrial carrier protein 126 220 IPR018108 -
Trre16g00693 351 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Trre16g00693 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 348 - -
Trre16g00693 351 Gene3D Mitochondrial carrier domain 31 349 IPR023395 -
Trre16g00693 351 SUPERFAMILY Mitochondrial carrier 24 339 IPR023395 -
Trre16g00693 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 109 IPR018108 -
Trre16g00693 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 253 342 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00693 Trre-Chr16 5292210 5293265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00693 1 348 Chloroplast and Mitochondria Gene Families AT1G72820 72.650 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00693 K15121 - gmx:100784616 550.051