Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00681 ATGTCTCTTTCACAAGAAACCATTGAAGGAGATGCAAATCACCTTACACAAGGAGATGTCCAAAATGAAGATGGCATTGTTTTTGCTTTAAACTTGATATCTTCAGTCATGCTTCCATTGACCGTCCGGTCCGCAGTTGAGCTTGGCGTCTTCGACATCTTAGCCAAAGAAGGAAAAGATGCCAAACTCTCTGCAAATGATATTGCAGTTAAGATTGGATCGAAAAATCCAGAAGCACCCACAATGTTGAACCGTCTTTTGAGGTTATTGGCCAGTCACTCCATGTTATATTGCTCGCTTTCTGAAGACGAACAAGGACATTCGTCTCCTCAGAGGCTCTATAGCCTCGCCCCTATCTCTAAGTATTTTGTAACGGATGTTGATGGTGTGTCGTTTGGACCAGCATTAAACTTACCTTTGGACAAAGTTTTCTTGGGAAGCTGGACCGAAATGAAAGGAGCAATTTTGGAAGGAGGTATACCATTCAATAGGGTTTATGGCATGCATGCATTTGAATATCCAGTTGTGGACCCAAGGTTTAATGATGTTTTCAACAATGCTATGGTCAATACTACCACTATTGTCATGAAGAGGATTCTTGAGATCTATGAGGGTTTTAAGAACATCAATAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATTAATATCAAGTTAATTACTTCTAAATATCCTCATATACATGGTGTTAATTTTGACTTGCCACATGTCCTAGAACATGCACCTACCTATCCCGGTGTGACACATGTGGGAGGAGATATGTTTGAAAGTGTACCCGATGGAGATGTTATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACATTGCTTGAAGTTATTGAAGAATTGTCATAAAGCTAGTCCAAATGATGGAAAAGTGATTGTTGTGGATTCAATTATCCCTACTTTGCCTGAGAGTACAATGGTAGCTAAGACTGGTTTTCAAGCTGACCTAATGATGATGGCTCAAAATCCAGGAGGCAAAGAAAGAACCAAAGACGAGTTCATGGAATTGGCATTAGGATCTGGATTTAGTGACATCAATTTTGCTTGTTATTTCTCTGGCTTTTGGGTTATGGAATTTATCAAGTAG 1116 0.3987 MSLSQETIEGDANHLTQGDVQNEDGIVFALNLISSVMLPLTVRSAVELGVFDILAKEGKDAKLSANDIAVKIGSKNPEAPTMLNRLLRLLASHSMLYCSLSEDEQGHSSPQRLYSLAPISKYFVTDVDGVSFGPALNLPLDKVFLGSWTEMKGAILEGGIPFNRVYGMHAFEYPVVDPRFNDVFNNAMVNTTTIVMKRILEIYEGFKNINRLVDVGGGLGINIKLITSKYPHIHGVNFDLPHVLEHAPTYPGVTHVGGDMFESVPDGDVIFLKWILHDWSDEHCLKLLKNCHKASPNDGKVIVVDSIIPTLPESTMVAKTGFQADLMMMAQNPGGKERTKDEFMELALGSGFSDINFACYFSGFWVMEFIK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00681 371 Gene3D Vaccinia Virus protein VP39 125 371 IPR029063 -
Trre16g00681 371 FunFam Caffeic acid O-methyltransferase 124 371 - -
Trre16g00681 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Trre16g00681 371 PANTHER O-METHYLTRANSFERASE 32 352 IPR016461 GO:0008168
Trre16g00681 371 FunFam Caffeic acid 3-O-methyltransferase 9 123 - -
Trre16g00681 371 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Trre16g00681 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Trre16g00681 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
Trre16g00681 371 PIRSF O-mtase 8 371 IPR016461 GO:0008168
Trre16g00681 371 Gene3D - 9 123 IPR036388 -
Trre16g00681 371 SUPERFAMILY "Winged helix" DNA-binding domain 22 126 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00681 Trre-Chr16 5164355 5166338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00681 13 371 Monolignol Biosynthesis Gene Families AT5G54160 51.381 3.59e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00681 K13066 - gmx:100789402 556.214