Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00671 ATGGTAGAATCAGATGTTGTTACCACCATTATTGCCGTTAACGCCGGCCGAAATAGCCAATATGCCGTGAAATGGGCCGTGGAGCACCACCTAGAAAAGAATTTTAAATGTATCCTTATTCATGTTCGAACCAAACCCATCACTCATTGCCATGAACATGTTGATGATGTTTCTAAACATGGTCGTCCACCAACACAAGAAGAATTGCATCAATTCTTTCTTCCCTTCCGTGGGTTTTGTGCTAGAAAAGGGATTGAGGCAAAAGAATTGGTCTTACATGACATTGATGTTCCTAGTGCCCTTACTGAATATGTTGTTGAAAATTCTATCAACAATGTTGTTGTTGGTGGTTGTGCTTCCCATTGGAATGCTTTTATAAGGAGATTTAAAGAAGTAAATGTTGCACATTCCTTAGCTAAATCTTTACCAGAGTCATGCACATTACATGTTATATCAAGAGGAAAAGTACAAACTATTCAACCAACAGGGCCTCCTATTCCTAATCGTCATCAAACTAGTACTCAACCTCAAAATATTGAAGTCACACCAACTAGATCTATAAGAGACATAGTTAAACTATTGCAAAACGTAAATAAGTTTATTGAACATACATCTGATTCTGATGATACAAACAGGAGTTCGTCAATAGAAGCAAACAAATTTTGGGAACCATTACATGATATGAAAGATGTTATACAATTGAAACCACGTATATCCAATGTTGTTGAAGATAACTATTCACCAAGAGGACCAATATTTTCAATAGGGAGCACCTCATCACAAACTTCATCATCAATGGGAAGTACCTTATCACAAACTTCATTAAATAGAAGCTCTCCTCTCAATAGCAATGATAGTTTAGGGAAAATAAGCAATAACAACGATACACATTACGCATTTTCTTCAAAACCACCGATAAGCATCGAGACAGAAATAAAGAAATTAAAACTAGACTTGAAGAAAGCATCGGAGCAATACGGTATAGTGTGCAAAGAAGCTGTTTCAGCAAAAATGAAGGCAACTGAGCTTGAAAAGTTTAGACAAGAAAAAGAACGCAATGTCGAAGAAGCAAGGCTTGCTGAAGAGGCTGCATTGGCTTTAGCAGAAGTAGAGAGACAAAAAGCGAAGGCGGCTTTAGAATCTGCCGAAATGTCGCAACGTCTAGCAGAAATGGAAACTCAAAAGAGAAAACTAGCAGAATTAAAAGCGAAACACGATGAAGAAGATAGGAGACGAACACTACATGATGTTGTGTTTAATAACATTGCATACAGAAGATACAATATTGAAGAAATTCAAGTTGCAACCAATAGTTTTGACAATGCTCTCAAAATTGGTGAAGGAGGGTATGGACCTGTTTTTAAAGCTGTTCTTGATCACACTGATGTTGCCATAAAGGTTCTTAGACCTGATTTGGCTCATGGAGAGAGGCAATTTCAACAGGAGGTTCTTGTTTTAAGCACCATAAGACATCCCAACATGGTGCTCCTTCTAGGTGCATGCCCGGAGTATGGATGCCTTGTGTATGAACACATGGAAAATGGTAGTTTAGAAGATCGTCTATTCCGAAAAGACAACAGTCCACCAATTCCATGGAAAAATCGTTTCTTAATAGCATCTGAAATTGCGACTGGCCTTCTTTTCCTTCACCAAAGAAAGCCTGAGCCACTAGTACACCGCGATTTGAAACCAGGAAACATTCTCTTGGACAAAAACTATGTTAGCAAGATCAGTGATGTTGGTTTGGCACGACTCGTTCCAGCTTCAGTATCTAACAAAACCACTCAATATCACATGACAGGTGCTGCTGGAACATTTTGTTACATTGATCCTGAGTATCAACAAACTGGGATGTTGGGTGTGAAATCAGATATATATTCATTAGGTGTAGTGTTACTGCAAATTATTACTGCAAAGCCTCCAATGGGTTTGTCTCATCTGGTTGAAGAGGCTATCCAAAATGGGGAATTCATAGATGTGCTTGACTCAACTGTGCCAGATTGTCCTATTGAAGAGGCTTTATCATTTGCTAAGTTGGCCTTAAAGTGTTGTGAGTTGAGAAAACGTGATAGACCTGATCTTGCTACTGTTATTTTGCCAGAGTTGAATAGAATATCACAAATTTGGGACTGTGATGAAGATTAA 2145 0.3837 MVESDVVTTIIAVNAGRNSQYAVKWAVEHHLEKNFKCILIHVRTKPITHCHEHVDDVSKHGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPSALTEYVVENSINNVVVGGCASHWNAFIRRFKEVNVAHSLAKSLPESCTLHVISRGKVQTIQPTGPPIPNRHQTSTQPQNIEVTPTRSIRDIVKLLQNVNKFIEHTSDSDDTNRSSSIEANKFWEPLHDMKDVIQLKPRISNVVEDNYSPRGPIFSIGSTSSQTSSSMGSTLSQTSLNRSSPLNSNDSLGKISNNNDTHYAFSSKPPISIETEIKKLKLDLKKASEQYGIVCKEAVSAKMKATELEKFRQEKERNVEEARLAEEAALALAEVERQKAKAALESAEMSQRLAEMETQKRKLAELKAKHDEEDRRRTLHDVVFNNIAYRRYNIEEIQVATNSFDNALKIGEGGYGPVFKAVLDHTDVAIKVLRPDLAHGERQFQQEVLVLSTIRHPNMVLLLGACPEYGCLVYEHMENGSLEDRLFRKDNSPPIPWKNRFLIASEIATGLLFLHQRKPEPLVHRDLKPGNILLDKNYVSKISDVGLARLVPASVSNKTTQYHMTGAAGTFCYIDPEYQQTGMLGVKSDIYSLGVVLLQIITAKPPMGLSHLVEEAIQNGEFIDVLDSTVPDCPIEEALSFAKLALKCCELRKRDRPDLATVILPELNRISQIWDCDED 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00671 714 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 412 511 - -
Trre16g00671 714 ProSiteProfiles Protein kinase domain profile. 439 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00671 714 SMART serkin_6 439 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00671 714 SUPERFAMILY Protein kinase-like (PK-like) 415 698 IPR011009 -
Trre16g00671 714 Gene3D Phosphorylase Kinase; domain 1 418 511 - -
Trre16g00671 714 CDD STK_N 8 154 - -
Trre16g00671 714 Gene3D Transferase(Phosphotransferase) domain 1 512 711 - -
Trre16g00671 714 Pfam Protein tyrosine and serine/threonine kinase 444 697 IPR001245 GO:0004672|GO:0006468
Trre16g00671 714 MobiDBLite consensus disorder prediction 253 302 - -
Trre16g00671 714 Coils Coil 340 411 - -
Trre16g00671 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Trre16g00671 714 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 118 - -
Trre16g00671 714 MobiDBLite consensus disorder prediction 158 179 - -
Trre16g00671 714 FunFam Os07g0541700 protein 512 602 - -
Trre16g00671 714 Gene3D HUPs 8 149 IPR014729 -
Trre16g00671 714 PANTHER OS02G0152300 PROTEIN 10 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00671 Trre-Chr16 5058500 5063412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00671 3 708 Receptor kinase-like Gene Family AT1G78940 45.924 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre16g00671 PK_Tyr_Ser-Thr 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00671 - - gmx:100799611 890.952