Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00670 ATGGTAGAATCAGATGTTGTTACCACCATTATTGCCGTTAACGCCGGCCGAAATAGCCAATATGCCGTGAAATGGGCCGTGGAGCACCACCTAGAAAAGAATTTTAAATGTATCCTTATTCATGTTCGAACCAAACCCATCACTCATTGCCATGAACATGTTGATGATGTTTCTAAACATGGTCGTCCACCAACACAAGAAGAATTGCATCAATTCTTTCTTCCCTTCCGTGGGTTTTGTGCTAGAAAAGGGATTGAGGCAAAAGAATTGGTCTTACATGACATTGATGTTCCTAGTGCCCTTACTGAATATGTTGTTGAAAATTCTATCAACAATGTTGTTGTTGGTGGTTGTGCTTCCCATTGGAATGCTTTTATAAGGAGATTTAAAGAAGTAAATGTTGCACATTCCTTAGCTAAATCTTTACCAGAGTCATGCACATTACATGTTATATCAAGAGGAAAAGTACAAACTATTCAACCAACAGGGCCTCCTATTCCTAATCGTCATCAAACTAGTACTCAACCTCAAAATATTGAAGTCACACCAACTAGATCTATAAGAGACATAGTTAAACTATTGCAAAACGTAAATAAGTTTATTGAACATACATCTGATTCTGATGATACAAACAGGAGTTCGTCAATAGAAGCAAACAAATTTTGGGAACCATTACATGATATGAAAGATGTTATACAATTGAAACCACGTATATCCAATGTTGTTGAAGATAACTATTCACCAAGAGGACCAATATTTTCAATAGGGAGCACCTCATCACAAACTTCATCATCAATGGGAAGTACCTTATCACAAACTTCATTAAATAGAAGCTCTCCTCTCAATAGCAATGATAGTTTAGGGAAAATAAGCAATAACAACGATACACATTACGCATTTTCTTCAAAACCACCGTTACAGATAAGCATCGAGACAGAAATAAAGAAATTAAAACTAGACTTGAAGAAAGCATCGGAGCAATACGGTATAGTGTGCAAAGAAGCTGTTTCAGCAAAAATGAAGGCAACTGAGCTTGAAAAGTTTAGACAAGAAAAAGAACGCAATGTCGAAGAAGCAAGGCTTGCTGAAGAGGCTGCATTGGCTTTAGCAGAAGTAGAGAGACAAAAAGCGAAGGCGGCTTTAGAATCTGCCGAAATGTCGCAACGTCTAGCAGAAATGGAAACTCAAAAGAGAAAACTAGCAGAATTAAAAGCGAAACACGATGAAGAAGATAGGAGACGAACACTACATGATGTTGTGTTTAATAACATTGCATACAGAAGATACAATATTGAAGAAATTCAAGTTGCAACCAATAGTTTTGACAATGCTCTCAAAATTGGTGAAGGAGGGTATGGACCTGTTTTTAAAGCTGTTCTTGATCACACTGATGTTGCCATAAAGGTTCTTAGACCTGATTTGGCTCATGGAGAGAGGCAATTTCAACAGGAGGTTCTTGTTTTAAGCACCATAAGACATCCCAACATGGTGCTCCTTCTAGGTGCATGCCCGGAGTATGGATGCCTTGTGTATGAACACATGGAAAATGGTAGTTTAGAAGATCGTCTATTCCGAAAAGACAACAGTCCACCAATTCCATGGAAAAATCGTTTCTTAATAGCATCTGAAATTGCGACTGGCCTTCTTTTCCTTCACCAAAGAAAGCCTGAGCCACTAGTACACCGCGATTTGAAACCAGGAAACATTCTCTTGGACAAAAACTATGTTAGCAAGATCAGTGATGTTGGTTTGGCACGACTCGTTCCAGCTTCAGTATCTAACAAAACCACTCAATATCACATGACAGGTGCTGCTGGAACATTTTGTTACATTGATCCTGAGTATCAACAAACTGGGATGTTGGGTGTGAAATCAGATATATATTCATTAGGTGTAGTGTTACTGCAAATTATTACTGCAAAGCCTCCAATGGGTTTGTCTCATCTGGTTGAAGAGGCTATCCAAAATGGGGAATTCATAGATGTGCTTGACTCAACTGTGCCAGATTGTCCTATTGAAGAGGCTTTATCATTTGCTAAGTTGGCCTTAAAGTGTTGTGAGTTGAGAAAACGTGATAGACCTGATCTTGCTACTGTTATTTTGCCAGAGTTGAATAGAATATCACAAATTTGGGACTGTGATGAAGATTAA 2151 0.3835 MVESDVVTTIIAVNAGRNSQYAVKWAVEHHLEKNFKCILIHVRTKPITHCHEHVDDVSKHGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPSALTEYVVENSINNVVVGGCASHWNAFIRRFKEVNVAHSLAKSLPESCTLHVISRGKVQTIQPTGPPIPNRHQTSTQPQNIEVTPTRSIRDIVKLLQNVNKFIEHTSDSDDTNRSSSIEANKFWEPLHDMKDVIQLKPRISNVVEDNYSPRGPIFSIGSTSSQTSSSMGSTLSQTSLNRSSPLNSNDSLGKISNNNDTHYAFSSKPPLQISIETEIKKLKLDLKKASEQYGIVCKEAVSAKMKATELEKFRQEKERNVEEARLAEEAALALAEVERQKAKAALESAEMSQRLAEMETQKRKLAELKAKHDEEDRRRTLHDVVFNNIAYRRYNIEEIQVATNSFDNALKIGEGGYGPVFKAVLDHTDVAIKVLRPDLAHGERQFQQEVLVLSTIRHPNMVLLLGACPEYGCLVYEHMENGSLEDRLFRKDNSPPIPWKNRFLIASEIATGLLFLHQRKPEPLVHRDLKPGNILLDKNYVSKISDVGLARLVPASVSNKTTQYHMTGAAGTFCYIDPEYQQTGMLGVKSDIYSLGVVLLQIITAKPPMGLSHLVEEAIQNGEFIDVLDSTVPDCPIEEALSFAKLALKCCELRKRDRPDLATVILPELNRISQIWDCDED 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00670 716 Coils Coil 342 413 - -
Trre16g00670 716 PANTHER OS02G0152300 PROTEIN 10 709 - -
Trre16g00670 716 SMART serkin_6 441 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00670 716 Coils Coil 307 327 - -
Trre16g00670 716 ProSiteProfiles Protein kinase domain profile. 441 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00670 716 Gene3D Phosphorylase Kinase; domain 1 420 513 - -
Trre16g00670 716 FunFam Os07g0541700 protein 514 604 - -
Trre16g00670 716 SUPERFAMILY Protein kinase-like (PK-like) 417 700 IPR011009 -
Trre16g00670 716 CDD STK_N 8 154 - -
Trre16g00670 716 Gene3D Transferase(Phosphotransferase) domain 1 514 713 - -
Trre16g00670 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Trre16g00670 716 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 414 513 - -
Trre16g00670 716 MobiDBLite consensus disorder prediction 158 179 - -
Trre16g00670 716 Pfam Protein tyrosine and serine/threonine kinase 446 699 IPR001245 GO:0004672|GO:0006468
Trre16g00670 716 Gene3D HUPs 8 149 IPR014729 -
Trre16g00670 716 MobiDBLite consensus disorder prediction 253 290 - -
Trre16g00670 716 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00670 Trre-Chr16 5058500 5063412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00670 3 710 Receptor kinase-like Gene Family AT1G78940 45.541 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre16g00670 PK_Tyr_Ser-Thr 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00670 - - gmx:100799611 885.945