Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00643 ATGGGGAATCAAAAGATTAAATGGACCTCGGAAGAAGAAGACGCACTTATTGCAGGAATCAAAAAACACGGTGCTGGAAAATGGAAAACCATTCTCCTTGATCCTCAGTTTGCTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTCACTGCTCAAGGTGTTAGAACTCCCAAGCCTAAAGTTGCTGCTACTCCTTCTTCTGATGTTGTTATCAATGATCCTTGTCAAAATGAACAAGATGTTAATACCCCTCCAAGGTACAATGCCATGGTTTTTGAAGCTCTATCTACATTGAAGGATACTAATGGGTCCGACCTAAACGCCATTGCTAGTTTCATTGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGACACTGAGTTCAAGGTTGAGGACCCTTGTGAATCAAGAGAAGCTTGAAAAGGTACAAAATTGTTATAAGATAAAAAAAGAAACCTCATTGGTGACAAAATCACCTTCATCAAAACAAAAGGTGGTTAGACCACAACAGCAATCATCAGCCTCCGATGATATGCTGGATTGCGCCGCTGATACTGCAGCATACATAGTTGCTGAGGCTGAAAATAAATCATATCTGGCAGTTGAGGCAGTCAAGGAGACTGAAAGAATCTCACGCTTGGCCGAAGAAAATGATGCAATGTTGTTGCTAGCAGAACAACTTTATAAACAATGTTTGCGCGGTGAAACTGTCAAGTGGGCTTAA 759 0.4084 MGNQKIKWTSEEEDALIAGIKKHGAGKWKTILLDPQFAPLLTSRSNIDLKDKWRNMNVYVTAQGVRTPKPKVAATPSSDVVINDPCQNEQDVNTPPRYNAMVFEALSTLKDTNGSDLNAIASFIEQKHQVPQNFRRTLSSRLRTLVNQEKLEKVQNCYKIKKETSLVTKSPSSKQKVVRPQQQSSASDDMLDCAADTAAYIVAEAENKSYLAVEAVKETERISRLAEENDAMLLLAEQLYKQCLRGETVKWA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00643 252 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre16g00643 252 Pfam Myb-like DNA-binding domain 7 56 IPR001005 -
Trre16g00643 252 Gene3D - 91 181 IPR036388 -
Trre16g00643 252 Pfam linker histone H1 and H5 family 96 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre16g00643 252 PANTHER SINGLE MYB HISTONE 4 1 249 IPR044597 GO:0003691
Trre16g00643 252 CDD H15 94 154 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre16g00643 252 CDD SANT_TRF 6 57 - -
Trre16g00643 252 Gene3D - 2 58 - -
Trre16g00643 252 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Trre16g00643 252 SMART sant 4 59 IPR001005 -
Trre16g00643 252 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 94 162 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre16g00643 252 SUPERFAMILY Homeodomain-like 3 59 IPR009057 -
Trre16g00643 252 SUPERFAMILY "Winged helix" DNA-binding domain 94 170 IPR036390 -
Trre16g00643 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Trre16g00643 252 SMART h15plus2 92 157 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00643 Trre-Chr16 4825111 4828713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00643 1 249 Single Myb Histone (SMH) Gene Family AT1G72740 46.429 2.76e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g00643 Linker_histone 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00643 K09422 - gmx:778177 300.827