Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00642 ATGTCCTCATCGTCGTCCACTAATCTTTCAGGTTTTGGGAAGCCGTCTTCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAAGGTTTGGATGTCATTCTACAGGCTCCGTCTGGAACAGGGAAGTCAGCAACATTCTGCATTGGAATTTTGCAGAAGCTTGATTATGGATTGGTTCAGTGTCAGGCATTGGTTTTGGCACCAACCAGTGAGCTAGCTTTACATATTCAGAAGGTTATGCGAGATCTTGGTAAATTCCTTGGTGTTAAGGTTCATGCTTGTTTTGGCGGGACAAGTGTTCGTAGGAATCAGCGCATTCTTCAAAATGGTGTTCACACTGTTGTTGGTACTCCGGGTCGTGTCTATGATATGCTGCAGAGGGGGGCTCTTCGCCCTGATGGCATAAAGATGTTTGTTTTGGATGAACTTGATGAAATGCTTTCACATGGTTTCAAGGAGAAGATCCATTTAATCTTCGAGCTACTGCCCAGCGAAATTCAGATTGGAGTAATCTCTGCTGCAATGCCCCCTGAAGCCCATGAAATTACTAGGAAGTTCATGAAAAAGCCAGTGATAATTCAGGAAAAGTGTGATGAGCCAGTGAGAGTTCAGGAAAAGTGCGGTGAACCGGTGAGAGTTCAGGAAAAGCCTGATGAGCCAGTGAAAGTTCAGGAAAAGCGTGACGAACCAGTGCGAGTTCAGGAAAAGCGCGGTGAACCAGTGAGAATTCAGGAAAAGCGCGATGAGCCAACCCTTGAGGGTATCAAGCAGTTTTATGTCACTGTTGAAAAGGAAGAGTGGAAGTTAGAGACATTAAGCGACTTGTACGAGACTCTATCCACCACTCGGTGTATCGTTTTTGTGAATACCGGGAGCAAAATGGACTGGCTCACTGACAAGATGCAAAGCAAAAACCATACAGTGTCGGGCATCCATGGTGACATGGACCAGAACACTAGGGATATCGTCGTGCGTGAGTTCCAGTCTGGCTCTCCTCAAGTTCTCATTACCACCGACCCCTTGGTCCCTGGTATCGATGTGCAGGAAGTGTCTCTGGTCGTAAACTATGATCTCCCAACTCTACCTGAAAACTATGTCCACCGTATGGGTCGTGGTGGTCGATTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATGCTGGAATGCTTGCTGATATTCAGAAATTCTACAATGTGAGTATGGAGGAGATGCCATCAAATGTTGCTGATCTACTCTCATGA 1251 0.4564 MSSSSSTNLSGFGKPSSIQQRGIVPFCKGLDVILQAPSGTGKSATFCIGILQKLDYGLVQCQALVLAPTSELALHIQKVMRDLGKFLGVKVHACFGGTSVRRNQRILQNGVHTVVGTPGRVYDMLQRGALRPDGIKMFVLDELDEMLSHGFKEKIHLIFELLPSEIQIGVISAAMPPEAHEITRKFMKKPVIIQEKCDEPVRVQEKCGEPVRVQEKPDEPVKVQEKRDEPVRVQEKRGEPVRIQEKRDEPTLEGIKQFYVTVEKEEWKLETLSDLYETLSTTRCIVFVNTGSKMDWLTDKMQSKNHTVSGIHGDMDQNTRDIVVREFQSGSPQVLITTDPLVPGIDVQEVSLVVNYDLPTLPENYVHRMGRGGRFGRKGVAINFVTLDDAGMLADIQKFYNVSMEEMPSNVADLLS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00642 416 Gene3D - 3 195 IPR027417 -
Trre16g00642 416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 23 193 IPR014001 -
Trre16g00642 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 395 IPR027417 -
Trre16g00642 416 Pfam Helicase conserved C-terminal domain 268 376 IPR001650 -
Trre16g00642 416 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 398 - -
Trre16g00642 416 Gene3D - 247 415 IPR027417 -
Trre16g00642 416 Pfam DEAD/DEAH box helicase 17 179 IPR011545 GO:0003676|GO:0005524
Trre16g00642 416 CDD SF2_C_DEAD 255 367 - -
Trre16g00642 416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 254 415 IPR001650 -
Trre16g00642 416 SMART helicmild6 295 376 IPR001650 -
Trre16g00642 416 SMART ultradead3 11 206 IPR014001 -
Trre16g00642 416 FunFam Eukaryotic initiation factor 4A-III 249 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00642 Trre-Chr16 4816102 4818753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00642 11 415 Eukaryotic Initiation Factors Gene Family AT1G72730 64.444 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00642 K03257 - gmx:100809395 525.783