Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00640 ATGGAACCTCGAATTGGGAATAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTTGGAGAGATCTATCTCGGTACCAATATTCAAACAAATGAAGAGGTTGCGGTTAAGCTTGAAAATGTCAAAACCAAGCACCCACAATTGTTGTATGAAGCAAAGCTGTATAAACTACTGCAAGGAGGAACTGGGATTCCGAATGTGAAATGGTCCGGTGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGACTTGTTCAATTTCTGTAATAGGAAGTTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTGGAATTTTTTCATTCCAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGATAGTACAAATCGGCATATTCCGTACAGAGAGAATAAGAATCTGACCGGAACTGCTAGGTATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGTCGCAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCCGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGAAAAAAGTTTCTACTTCTATTGAGTCTCTCTGCCATGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGATCACTGAGGTTTGATGATAAACCTGATTATGCTTATCTGAAAAGACTTTTGCGTGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCAACCCTCCTTCCCGTGGTATTGGTCTTGCTGCTGGACCAAGTTCCGGTCTGCCGCTAACTTCTGCAAATGCTGATGGACAGTCAGGTGGCAAAGATGTTAGGCATACTGGGTGGTCTTCATCTGATCCCACTCGTAGGAGAACTTCTGGACCTATTGCCAATGATGGAATCTTATCTAGAGAAAAAGCACCGGTTACAAATGACTTATCTGGATCTAAAGATGCTATGTTGTCAAGTTCGAATTTCTTTCGGTCAAGTGGATCTGCAAGGCGAGGTGCTATCTTAAGTGGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGCCCTCCTCTCGTCCTCTCACTATGGATTCAAGTCAAGGCGCACTCCGTAACAGCTCTGGTGCTCAGAGAAGTTCACATATCATGTCATCTGAGCACAACCGAGTATCATCTGGAAGAAACACATCAAACATAAAGAATTTGGATTCAACTCTTAGAGGTATTGAGAGTCTGCATATTAACGATGAGAGGGCACAGTATTAG 1422 0.4241 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENVKTKHPQLLYEAKLYKLLQGGTGIPNVKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSTNRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCHGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIANPPSRGIGLAAGPSSGLPLTSANADGQSGGKDVRHTGWSSSDPTRRRTSGPIANDGILSREKAPVTNDLSGSKDAMLSSSNFFRSSGSARRGAILSGRDAVVGSETEPSSRPLTMDSSQGALRNSSGAQRSSHIMSSEHNRVSSGRNTSNIKNLDSTLRGIESLHINDERAQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00640 473 PANTHER CASEIN KINASE-RELATED 13 424 - -
Trre16g00640 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre16g00640 473 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Trre16g00640 473 MobiDBLite consensus disorder prediction 318 377 - -
Trre16g00640 473 MobiDBLite consensus disorder prediction 318 348 - -
Trre16g00640 473 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00640 473 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00640 473 CDD STKc_CK1_delta_epsilon 8 281 - -
Trre16g00640 473 MobiDBLite consensus disorder prediction 399 451 - -
Trre16g00640 473 FunFam Putative Casein kinase I 1 85 - -
Trre16g00640 473 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Trre16g00640 473 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00640 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre16g00640 473 FunFam Casein kinase I isoform delta-like 1 307 - -
Trre16g00640 473 MobiDBLite consensus disorder prediction 407 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00640 Trre-Chr16 4805154 4809908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00640 7 222 EF-hand Containing Proteins AT2G17890 26.339 2.23e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre16g00640 Pkinase 9.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00640 K02218 - gmx:100778165 791.956