Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00639 ATGACACGCGGAAGGATAAGGGCGAGGCTCCGAAGGAGCCATTTTTATACATTTGGTTGTCTTCGACCTACTACCACTGAAGAGGGGCCTCATGCACTTCAAGGTCCTGGGTACTCGCGAACCGTGCACTGTAACCAGCCTGAGATCCATGAGAAGAGACCTTTCTATTATTGCAAGAATGATATTTCCACAACTAAATATAATGTGCTTACATTTTTTCCTAAGGCACTTTTTGAACAGTTTCGTAGAGTTGCTAATATATACTTTCTTTTGGCTGCATGTCTCTCAGCCTCTCCAATTTCACCTTTTAGTCCTCTGAGTATGATTGCTCCTTTGGCATTTGTTGTTGGCCTTAGTATGGCAAAGGAAGCATTGGAAGATTCACGCAGATTCGTTCAGGATGTTAAAGTTAACCGCCGAAAAGTTAATCATCATAAAGGTGATGGTGTTTTTGGTCACAGGTCGTGGCAAAACATTATGGTTGGGGATGTAGTAAAAGTAGAAAAGGATAAGTTTTTTCCAGCTGATTTGCTGCTCTTGTCATCAAGTTATGAGGACGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGTCTACCTTGGCCCTAGATAGTGATGAAGCTTTTAAGGATTTCACTGGAACAATAAGATGTGAAGACCCAAACCCCAATCTTTACACTTTTGTTGGAAACTTTGAGCATGAGCGCCAAGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCTAAGCTCAGGAACACAGAATACATCTATGGAGTGGTCATTTTCACTGGCCACGACAGTAAAGTCATGCAAAATTCCACAAGATCCCCTTCAAAAAGGAGCACGATAGAAGAGAAGATGGATTATATCATATACACCCTCTTCACCGTCCTTATCTTTATATCTATCATTAGTTCCATAGGATTCATTGTCAAGACTAAGTACCAAACCCCTACGTGGTGGTACCTACGCCCCGACAATATCGAATCCCAGTATGATCCCCAGAAAATTGGAGTGGCTGCGTTGAGTCATTTGGTTACTGCTCTCATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCTCATGTATGATGAAGAAACCGGAACTCCAGCTGACGCACGAACTTCAAATTTGAATGAAGAGTTGGGTCAGGTGGATACAATTCTCTCTGATAAAACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCTATTGCGGGTACTCCATATGGTGCATGTTCTAGTGAAGTTGAAGTTGCTGCAGCAAAACAGATAGCTTCTGATCTTGAGGACGATGATTCAGATCTCTCCAATTTCCCAATGCCTAATAAGAAAGTACATGTTTCATGGGAAAATGTTGGAGGAGCTGAAGAATATGAACTAGAGACTGTTGTTACTTCCAAAGGTGATGAGGATGAAAAGCATGCCATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATGGTAATTGGTTGCAAGAGCCCAATACCAATGATATTTTATTATTTTTCCGAATACTTGCTGTTTGCCATACTGCCATTCCTGAGCTAAATGAGGAAACAGGCCATTTTACATATGAAGCGGAGTCTCCAGATGAAGGGGCTTTTCTAGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGTAGGAGGACTCAGTCAAGTATTTTCACACGCGAAAGACTTTCTGCTTCAGGGCAAGTGGTTGAAAGGGAGTACAAACTCTTAAATCTACTAGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCCAACTTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTTGATCGTTTGTCCAAGAATGGAAAAAATTATTTGGAGGCTACTACCATGCATTTAAATGATTACGGAGAAGCAGGTTTGCGAACACTAGCTCTGGCCTATAGAAGGCTTGAAGAAAAAGAGTACTCGGATTGGAACGATGAGTTTCAGAAAGCCAAAGCAGCTGTTGGGGCTGACAGAGATGCAATGCTTGAGCGGGTATCAGAGATAATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTATAGAAGACAAACTGCAGAAAGGGGTTCCTGAGTGCATTGATAAACTTGCTCAAGCTGGTCTCAAGATTTGGGTATTGACGGGGGATAAGATGGAAACTGCAATCAACATTGGATTTTCCTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATATCTGTAAATTCAGACTCAGCATCCAATGATGTTAAACAGGCCATCAAGGACAACATATTAAATCAAATCACCAATGCTACACAAATGATAAAGCTGGAGAAGGACCCTCATGCTGCATTTGCATTAATCATTGATGGGAAAACTCTGACATACACTTTAGAAGATGACCTGAAGCACCAATTTTTGGGTCTGGCAGTTGATTGTGCATCTGTCATATGCTGCCGTGTGTCTCCCAAGCAAAAGGCACTGGTCACAAGGTTGGTAAAACAAGGAACTGGGAAGACCACTCTCGCAATAGGTGATGGTGCAAATGATGTTGGCATGATACAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTCTCGATTGCCCAATTTCGATTTTTGGAGCGGCTTCTGGTGGTGCATGGACACTGGTGTTACAAGAGAATTGCACAGATGATATGCTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTACAGGCTTCTCGGGCCAATCGGTATATGATGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTACCCGTCATTTCACTAGGCGTTTTTGAACAAGATGTTCCGTCGGACGTTTGTCTACAGTTTCCTGCATTGTACCAACAAGGACCCAGAAATTTGTTCTTTGATTGGTATAGAATATTGGGATGGATGGCCAACGGTTTATATTCCTCTATCATCATCTTCTTCCTCACCGTCACCATATTATATGATCATCCATTCCGTGAAGATGGTCAGACAGCTGACATGGCTGCTGTTGGAACCACAATGTTCACTGGCATCATCTGGGCTGTCAACTGCCAAATTGCGCTGACAATGAGCCATTTTACCTGGATTCAACATCTGTTTATATGGGGTAGTGTAATGACTTGGTACCTCTTTCTCATGATATATGGCACACTTTCTCCTGAGTATTCTAAGAATGCCTACCATTTGCTAGTTGAAGCTCTTGGACCTGCACCTATTTATTGGTCAACAACACTTTTAGTTACAATTACATGCAATCTTCCTTATCTTGTCCACATATCATTACAAAGATGTTTTAATCCCATGGATCACCATATTATCCAAGAAATCAAGCACTACAAGAAAGATATTGAGGATCAACACATGTGGATAAGGGAGAGTTCTAAAGCCAGACAAGAAACCAAGATTGGATTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAGGGCAAGCTGCAGAAAAAACAATCTTTCTTGTCTGTTATGTCCCCATTACGTACATAA 3678 0.4146 MTRGRIRARLRRSHFYTFGCLRPTTTEEGPHALQGPGYSRTVHCNQPEIHEKRPFYYCKNDISTTKYNVLTFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGDGVFGHRSWQNIMVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSDEAFKDFTGTIRCEDPNPNLYTFVGNFEHERQVYPLDPSQILLRDSKLRNTEYIYGVVIFTGHDSKVMQNSTRSPSKRSTIEEKMDYIIYTLFTVLIFISIISSIGFIVKTKYQTPTWWYLRPDNIESQYDPQKIGVAALSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDILMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTPYGACSSEVEVAAAKQIASDLEDDDSDLSNFPMPNKKVHVSWENVGGAEEYELETVVTSKGDEDEKHAIKGFGFEDDRLMNGNWLQEPNTNDILLFFRILAVCHTAIPELNEETGHFTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFTRERLSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGQLFLLCKGADSIIFDRLSKNGKNYLEATTMHLNDYGEAGLRTLALAYRRLEEKEYSDWNDEFQKAKAAVGADRDAMLERVSEIMEKELILVGATAIEDKLQKGVPECIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICISVNSDSASNDVKQAIKDNILNQITNATQMIKLEKDPHAAFALIIDGKTLTYTLEDDLKHQFLGLAVDCASVICCRVSPKQKALVTRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSDVCLQFPALYQQGPRNLFFDWYRILGWMANGLYSSIIIFFLTVTILYDHPFREDGQTADMAAVGTTMFTGIIWAVNCQIALTMSHFTWIQHLFIWGSVMTWYLFLMIYGTLSPEYSKNAYHLLVEALGPAPIYWSTTLLVTITCNLPYLVHISLQRCFNPMDHHIIQEIKHYKKDIEDQHMWIRESSKARQETKIGFTARVEAKIRQLKGKLQKKQSFLSVMSPLRT 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00639 1225 CDD P-type_ATPase_APLT_Dnf-like 60 1040 - -
Trre16g00639 1225 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Trre16g00639 1225 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Trre16g00639 1225 FunFam Phospholipid-transporting ATPase 724 920 - -
Trre16g00639 1225 NCBIfam HAD-IC family P-type ATPase 852 961 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g00639 1225 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 518 687 IPR023299 GO:0000166
Trre16g00639 1225 Pfam Cation transport ATPase (P-type) 546 651 - -
Trre16g00639 1225 SFLD p-type atpase 405 931 IPR044492 -
Trre16g00639 1225 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1149 IPR023298 -
Trre16g00639 1225 Gene3D - 720 920 IPR023214 -
Trre16g00639 1225 Gene3D - 594 700 IPR023299 GO:0000166
Trre16g00639 1225 Gene3D - 419 431 IPR023214 -
Trre16g00639 1225 FunFam Phospholipid-transporting ATPase 118 288 - -
Trre16g00639 1225 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 38 1182 - -
Trre16g00639 1225 SUPERFAMILY HAD-like 417 935 IPR036412 -
Trre16g00639 1225 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
Trre16g00639 1225 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Trre16g00639 1225 Gene3D - 113 288 - -
Trre16g00639 1225 Gene3D - 432 455 IPR023299 GO:0000166
Trre16g00639 1225 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Trre16g00639 1225 NCBIfam phospholipid-translocating P-type ATPase 57 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g00639 1225 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Trre16g00639 1225 SFLD Haloacid Dehalogenase 405 931 - -
Trre16g00639 1225 FunFam Phospholipid-transporting ATPase 591 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00639 Trre-Chr16 4797565 4803053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00639 1 1221 Primary Pumps ATPases AT1G17500 73.998 0.0 1905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00639 K01530 - gmx:100819559 2167.89