Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00637 ATGGGTTCGGACATAATATGTAATGATTGTGGCACGGACCCTGCAACACATACCCGACTGAAGGGAAGAGCAGCTCTTGAAGTAATTGAAGAAAACAAGGGGAGTAGCTCCATTGAAGGCATAACGTTGGATTTGTCTCAAAATAATAATTTCCCTCTAAGTGCAGACACCTTCACCAAGATGGAAGGCTTAAGAATTCTTAAATTCTATGCACCCTCTAACCAGAGGTGTACCGATCCATACAAAAACCTTCCCAAATTTCTTGAGCCATTTTCAAAAAATAAACTGAGCAATGTTAAACAACTGTGGCAGGGGATACAGGAACTTGATAAATTGGAGGGAATTGACCTGAGTGAATGCAAGCATTTTGTACTCCTTCCGGATTTGTCTAAGGCATCAATACTTAAATGGATCAATCTCTCTGGTTGTGAGAGTCTAGTTGATCTTCATCCATCTGTTTTATGCACAGATACACTTGTTACTTTGATACTGGATAGGTGTACAAAGGTTAGGAAAGTTAGAGGTGAAAAACATTTAAATTTTTTGGAGAAGATCAGTGTGGATGGGTGCTCAAATCTAGAGGAATTTGCTGTGTCCTCAGATTTAATTGAAAACTTGGATTTAAGCAGTACAGGAATCCAAACCCTGGACCTATCAATTGGTCGTCTTCACAAACTTAAACGACTTAATCTAGAAAGTTTAAGACTCAACCATCTTCCAAAGGAGTTATCTAGTGCAAGATCTATTATGGAATTGAAGATTTCTGGCAGCAAACTAATAGTCGATAAACAACAGCTACATGAGCTGTTTGATGGCTTACGATCCCTACAAATACTACATATGAAGGATGTTATAAACCCGTTTGAACTCCCCAACAACATCGACGTTCTATCAAAGTTAATGGAATTAAACCTTGATGGAAGCAACATGAAGAGGTTGCCTGAAAGCATTAAAAAACTTGAAGAACTTGAAATTCTGTCTTTGGTGAATTGCAGGGAGCTTGAGTGCATACCAGAGCTTCCACCTCTCATCACACTGTTAAATGCAGTTAACTGCATGTCACTGGTTTCAGTGTCAAGTCTAAAAAATTTAGCAACAAAGATGATGGGAAAAACCAAACACATTTCATTCAGTAACAGCTTGAATTTGGATGAACATTCACTCAACCTTATAATGGAAAGTCTAAAGCTAACAATGATGAGTGCTGTGTTTCAAAATGTGTCTGTAAGAAGACTTCGTGTGTCCGTTCACAGCTACAACTATAGCAGTGTTGATGCTTGTCAACCAGGAAAAAGTATCCCGAGTCTGTTCCAATGTCAAACAGCTACTGACTCTTCCATTACGATTACATTGATACCTGATCGTTCCAACCTGCTGGGATTCATATACTCGGTGGTTCTTTCTCCAACAGGTGGAAATGGAGTGAAGAAGGGTGAAGCTAGAATAAAGTGTCAATGCAACTTGGGAGAAGAAGGTATAAAGGCTTCCCAGCCAAATACTTATGTCACAGAGACGAACTCAGATCATGTTTATGTGTGGTATGATCCATTCCACTGTGACAGCATTCTCAGATTTTATAAACCCGAGATTTGTTTTGAGTTCTCTGTTACAAACGATGCGGGGGAAGTTGATGGTTCAATTGGTATTGAAAAGTGCGGGGTACGACTCGTAACTGTTGAAGATTTGGAGAGTGTTTTACCGGAATTGGAATTGGATTTGGAAAAGAAAAAGGAGTTAAAGATGGCAGTGAAATTTGAATCAGGCTTTTCTCAAGTTAAAATAGAATCAGTTGAAGATGAAAATGAGAATGAAAGCCACTTCAATAATGAGGAAGGGAACATCGTATCTTCTAACAAGGAAACCTATACCAATGCTGGATCCAGTCATGAGGAGAATGTTACAAACCCTAATTTACATCCTGTTTTCAAGGAAGATAAAGATGGTTGTTGTGGTTGCTTTCCTTGCAATTTTAATTTCAGAGTACTATTTCAGAAGATTAATACAAATTTATTGATTAAATATGAGATTAATGGTTATGCTGACACGGAAACTAAGAATCTTCAACAATCACCACCACCATTAGTGAAGAATCTAGAGATTCCATCTCATTCTTACACTAACACCCTAATGACTGCTGAGACTTCTTCAAGTAAACCTTCTTCTTCTTCTTCAAAGGATCATGAATATTCTCCTATTGATTATTCTGAATATAAGAGAATCCTTGAAGAAGACCCTTTAACAATCATGGAGAAACTCTTATCTGGTGATAAACTTTGTCGTGCTTCTCAATCTACTGAAACGCAGAGTGCGTCAATTGAGATGTTGCTTGATGAATTAAAACAATTGGCATTTTCAAGGAACTTATTGAAAAATTTACCCAATGATGTGACCCTTGGAGACGAGGTGAAAACTTTATTAGCTAAACTCGATGATAGAGCTAATGAGCTTTCTGAGAAACAAAGTTCTGGTATTGCTGATTTCACCACAATCTTTAAAGAAGCCATAATGAATATTGATGAAGGAAAACTCAGCAATGTTACTCTTCAACAACTTAATGTGGATCATAAAGATTCAATATCCAAGCTTCAAGCATCCAAAAACAAGATAATGAAGTTTGAAGTTACCTAA 2628 0.3756 MGSDIICNDCGTDPATHTRLKGRAALEVIEENKGSSSIEGITLDLSQNNNFPLSADTFTKMEGLRILKFYAPSNQRCTDPYKNLPKFLEPFSKNKLSNVKQLWQGIQELDKLEGIDLSECKHFVLLPDLSKASILKWINLSGCESLVDLHPSVLCTDTLVTLILDRCTKVRKVRGEKHLNFLEKISVDGCSNLEEFAVSSDLIENLDLSSTGIQTLDLSIGRLHKLKRLNLESLRLNHLPKELSSARSIMELKISGSKLIVDKQQLHELFDGLRSLQILHMKDVINPFELPNNIDVLSKLMELNLDGSNMKRLPESIKKLEELEILSLVNCRELECIPELPPLITLLNAVNCMSLVSVSSLKNLATKMMGKTKHISFSNSLNLDEHSLNLIMESLKLTMMSAVFQNVSVRRLRVSVHSYNYSSVDACQPGKSIPSLFQCQTATDSSITITLIPDRSNLLGFIYSVVLSPTGGNGVKKGEARIKCQCNLGEEGIKASQPNTYVTETNSDHVYVWYDPFHCDSILRFYKPEICFEFSVTNDAGEVDGSIGIEKCGVRLVTVEDLESVLPELELDLEKKKELKMAVKFESGFSQVKIESVEDENENESHFNNEEGNIVSSNKETYTNAGSSHEENVTNPNLHPVFKEDKDGCCGCFPCNFNFRVLFQKINTNLLIKYEINGYADTETKNLQQSPPPLVKNLEIPSHSYTNTLMTAETSSSKPSSSSSKDHEYSPIDYSEYKRILEEDPLTIMEKLLSGDKLCRASQSTETQSASIEMLLDELKQLAFSRNLLKNLPNDVTLGDEVKTLLAKLDDRANELSEKQSSGIADFTTIFKEAIMNIDEGKLSNVTLQQLNVDHKDSISKLQASKNKIMKFEVT 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00637 875 SUPERFAMILY L domain-like 43 361 - -
Trre16g00637 875 Gene3D Ribonuclease Inhibitor 201 402 IPR032675 -
Trre16g00637 875 Gene3D Ribonuclease Inhibitor 34 200 IPR032675 -
Trre16g00637 875 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 268 385 - -
Trre16g00637 875 Coils Coil 559 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00637 Trre-Chr16 4774277 4778202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00637 2 303 WRKY Transcription Factor Family AT4G12020 30.000 2.62e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00637 - - mtr:11418910 918.687