Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00634 ATGTCTATCGCTACCAAAAAATACGATGTATTCATTAGTTTTAGGGGTGAGGACACAAGGAAAAATTTCACGGGCAAGCTTCATGAAGCTCTTAAAAAGAAAAATATTGAAACATACATTGATTTATATGTTAAAGTAGGAGATGAGGTTGGTCCAATGCTTATTCAAGCAATCCATGACTCACATATAAGTGTCATTGTTTTCTCAAAAAACTTTGTAACCTCAAAATGGTGTTTGGAGGAACTCCTTCATATACTTGAATGTAGAAAACATCATGGACAAGTAGTTTTACCTGTTTTCTATGAAACAGATCCATCAAATATTGTAGGTGTTGGGATAGGGAGTTATGAGAAAGCATTTGCAAGATATGAGAGAGAGCTCATGAACAATCAATGTGATGATCTCACGAACCCCGACAAAGTTTACAAGTGGCAAGCTGCTCTTGCGGAGGTTGCCACTATATCTTCGCGGAACTCTTGTCACTATAGTGATGATTCTCAATTCATTCAATGTATTGTGAAAGATGTTTCACAAACACTATCCCAATTGTATCCTAATGAACTGAAAAATCTCATTCAAATTGATGAAAAATGTGAAGATATTGAAAACCATCTTGAAAAGTTACCAAGAATTGGAATTTGGGGTATGGATGGATTAGGAAAAACAACCATAGCTAGACAAATATTTTCCAAGCATTTACCACATTTTGATAGTGCATGCTTCTTAGAAAGCATAAGCCAAGAGTCAACAAAACTTGGACTCCCATATCTACGTGATAAGCTTCTTAGTGATCTACTAAAGGACCAAGTTTCTTCATCTGATTTTGATGGACTTGGTGGCAAAAATGTTTTCATTGTACTTGATGATGTGGATAATGCTATGCAATTAGATTATTTGTGTGGAGAACTCAATAATCTTGGACCAAATAGTAGAATCATTGTCACAACAAGAAATATGGATACACTTAATGGAAGAGTTGATGAAATACATGAGGTCAAAAGATGGATGTTGAAAGAATCTCTAGAGCTTTTTAACTTGGTGGCGTTCAAGCAAAGTCATCTTAAAGAGGGTTACGAGCGTCTCTCAGAAAGGGCTGTCGAATGTGCACAAGGTATTCCATTAGCTTTAAAAGTTTTGGGTTCACATTTTTATTCCAGAAGTCTCGAGTTCTGGGAATTTGAATTGAATTATTTGGAGAACAAGGAAGATTCGATGTGCGAAATACAAGATGTGTTAAGAGTGAGCTATAATGGATTAGAAGTGCGCGAGAAGGAAATGTTTCTAGACATTGCATTCTTTTTCAAAGATGAAAATAAAGAATTTGTTATAAGGATACTAGATGCTTGTGGTTTCAATGCTACTAGTGGAATAGATCTCCTTAAAGATAGAGCTCTTATAACCATTTCAAACGACAACAAAATACAAATGCATGACTTACACCAAAAAATGGCTTTTGATATTGTTCAATACAAAAAAGATCAAACAAAAAGAGATCCAAGAAAATGTATCCGATTAAGGGATACCGAAGAAGTTTGTAGTTTACTTAAAAATAACAAGGGGCCTCATAATAAAGTTGAAGGAATAGTATTTGATTTGACTCAAAAAGTAGACTTACATGTCCAAGAGAACACATTCAACTTGATGGCTAAACTAAGATATCTTAGACTATATGTCCCTTTGGGTAAAAAGATATGTGCTAACCTTTATCTTCCTGATCAAGGCATTCTACCATTTTCTGATAAATTGAGATACCTTGAGTGGTATGGTTACCCTTTGAAGTCTCTTCCACAACCTTTTTGTGTTGAGTTTCTCGTTGAGATTCGCTTGCCGCACAGCCGTGTAGAACATCTCTGGCATGGTATTCAGGAGCTTGTGAATTTAGAGGGAATCGACCTAAGTGAATGCAAACAACTGACGAATCTCCCTGACTTATCTAGGGCAACAAGACTTAAATGGTTGTTTCTCTCTGGTTGTGAAAGTTTATGTGAAATTCAACCATCTATTTTTTCTAATGACACACTTGTTACTTTGCTACTAAATCGGTGCAAGAAATTGGAAAGTCTTATAAGTGAAAAGCATTTAACATCTCTACAAAATATAGATGTTAGTGGTTGCTCAAGTCTCATTGAATTCTCATTGTCCTCAAATTCAATTGAAGGGTTGGATTTAAGCCAAACAATGGTTAAAACATTGCATCCATCAATTGGTCATATGAGCAATATTTTGTGCCTTAATCTGCAAGGTTTAAGGCTACAAAATGTACCAAAAGAATTGTCACACTTGAGATCACTTACTGAACTTTGGATTTCAAATTGCTGTGTGATAACGAAATCAAAGTTGGAAGACATATTTGAAAATGGTCTTGAATCATTAAAATCTTTATTCTTGAAAGATTGTTGCAACTTGTTTGAGCTTCCCGCGAACATCGATTCATTGTCATCATTACATGAATTAAGACTAGATGGAAGCAATGTGAAGAGGTTGCCTACAAACATCAAGACTCTTTCAAACCTATCAATTATGTCCTTAAACAATTGCAAGAACCTTACTTTTTTGCCAGAGCTTCCTCAACACATCAAAGAACTTCGTGCTGAAAACTGCACCTCATTGGTTAAAGTATCAACTTTGAAAACGATGTCAAAACACAGAAATGGAGATGAGAAATATATTTCATTCAAGAATGGAAAAAAGATGGAATCAGATGAACTTTCTCTCAACCACATCACTGAAGACGTAATACTAGTAATGAAGAGTGTTGCATTGTACAATGTTTTAGTCGATAAACGTTGTTCGGAAATTCATAGCTACAATTATGATAGTGTTGTGGTGTGTTTACCGGGAAGAAAAGTTCCAAGCCAGCTCAGATACAGAACAACAGATTCCAAAATAACTGTTGGTTTTTCAGACATACAGTACTCATTAGGATTCATTTTCTCAGTGGTTGTTTCTCCATCGAATAGAATGAAGAATGAGCATGACATTGACATTGACAGTGGTGCTAAAATTCAGTGCAAATGCTATAGAGAAGATGGCAGTAAGGTAGGATTTTCGTCGGAGTGGCATAGTGAACCTATAACAAATTTGGATATGGATCATGTTTTTGTGTGGTATGATCCTTACCGTTATGGCATCATACAATACATCAATGAAGGAAATTTTAGTTTTGGATTCAATGTTACAACTGATAGTGGTGAACATGATTACTTTGATCTCAGTGTGAAAGAGTGTGGGATATGTCCAATTTATACCTCAGAATTTTTTAGTCTTTTGGACATGCTGAATTTGGACAAGGATGTTGAATCATGTATGCGTAGAAATATTCATTGTGAGGAAAGATAA 3339 0.3531 MSIATKKYDVFISFRGEDTRKNFTGKLHEALKKKNIETYIDLYVKVGDEVGPMLIQAIHDSHISVIVFSKNFVTSKWCLEELLHILECRKHHGQVVLPVFYETDPSNIVGVGIGSYEKAFARYERELMNNQCDDLTNPDKVYKWQAALAEVATISSRNSCHYSDDSQFIQCIVKDVSQTLSQLYPNELKNLIQIDEKCEDIENHLEKLPRIGIWGMDGLGKTTIARQIFSKHLPHFDSACFLESISQESTKLGLPYLRDKLLSDLLKDQVSSSDFDGLGGKNVFIVLDDVDNAMQLDYLCGELNNLGPNSRIIVTTRNMDTLNGRVDEIHEVKRWMLKESLELFNLVAFKQSHLKEGYERLSERAVECAQGIPLALKVLGSHFYSRSLEFWEFELNYLENKEDSMCEIQDVLRVSYNGLEVREKEMFLDIAFFFKDENKEFVIRILDACGFNATSGIDLLKDRALITISNDNKIQMHDLHQKMAFDIVQYKKDQTKRDPRKCIRLRDTEEVCSLLKNNKGPHNKVEGIVFDLTQKVDLHVQENTFNLMAKLRYLRLYVPLGKKICANLYLPDQGILPFSDKLRYLEWYGYPLKSLPQPFCVEFLVEIRLPHSRVEHLWHGIQELVNLEGIDLSECKQLTNLPDLSRATRLKWLFLSGCESLCEIQPSIFSNDTLVTLLLNRCKKLESLISEKHLTSLQNIDVSGCSSLIEFSLSSNSIEGLDLSQTMVKTLHPSIGHMSNILCLNLQGLRLQNVPKELSHLRSLTELWISNCCVITKSKLEDIFENGLESLKSLFLKDCCNLFELPANIDSLSSLHELRLDGSNVKRLPTNIKTLSNLSIMSLNNCKNLTFLPELPQHIKELRAENCTSLVKVSTLKTMSKHRNGDEKYISFKNGKKMESDELSLNHITEDVILVMKSVALYNVLVDKRCSEIHSYNYDSVVVCLPGRKVPSQLRYRTTDSKITVGFSDIQYSLGFIFSVVVSPSNRMKNEHDIDIDSGAKIQCKCYREDGSKVGFSSEWHSEPITNLDMDHVFVWYDPYRYGIIQYINEGNFSFGFNVTTDSGEHDYFDLSVKECGICPIYTSEFFSLLDMLNLDKDVESCMRRNIHCEER 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00634 1112 SUPERFAMILY L domain-like 530 870 - -
Trre16g00634 1112 Pfam TIR domain 7 187 IPR000157 GO:0007165
Trre16g00634 1112 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 182 - -
Trre16g00634 1112 Gene3D - 4 176 IPR035897 -
Trre16g00634 1112 Gene3D Ribonuclease Inhibitor 716 888 IPR032675 -
Trre16g00634 1112 Gene3D Ribonuclease Inhibitor 469 715 IPR032675 -
Trre16g00634 1112 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Trre16g00634 1112 PRINTS Disease resistance protein signature 277 291 - -
Trre16g00634 1112 PRINTS Disease resistance protein signature 210 225 - -
Trre16g00634 1112 PRINTS Disease resistance protein signature 369 383 - -
Trre16g00634 1112 PRINTS Disease resistance protein signature 692 708 - -
Trre16g00634 1112 Pfam NB-ARC domain 201 402 IPR002182 GO:0043531
Trre16g00634 1112 ProSiteProfiles TIR domain profile. 6 180 IPR000157 GO:0007165
Trre16g00634 1112 Gene3D - 337 420 IPR042197 -
Trre16g00634 1112 SUPERFAMILY "Winged helix" DNA-binding domain 407 492 IPR036390 -
Trre16g00634 1112 SMART till_3 7 154 IPR000157 GO:0007165
Trre16g00634 1112 Gene3D - 177 330 IPR027417 -
Trre16g00634 1112 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 713 IPR044974 GO:0006952
Trre16g00634 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00634 Trre-Chr16 4754162 4757916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00634 4 818 WRKY Transcription Factor Family AT4G12020 31.198 1.58e-77 278