Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00633 ATGTCTCACTCTTTTCACGATTATGATGTGTTCATTAATTTTAGAGGAGAGGACACTCGAAAAACTTTCACTGCACAACTTCATCAAGCTCTCTGCAAAAAAAATATTAAAACATTCATCGATTATAATCTTAGAAAGGGAGATGAGGTTGCAAACTCACTCGAAATGGCAATATTGTGTTCGCGTATATCTATAGTTGTTTTTTCCGAAAACTATGCGACCTCAAAGTGGTGTTTACATGAACTCGCCCAAATAATGAGGTGTAGAAGATATGATGATCAAGTAGTTATACCTGTGTTTTATGAAGTAGATCCATCAGATGTTCGTAAGCAGACAGGAAGTTATGAAACAGCATTCGCCAGATATATAACTGAAGTTGCTACAAGTAAAAAGTTTGAGCAAACTGTCATTGACTGGAAAGCTGCTCTCACCGAAGCTGCCAATATATCTGGATGGGATTCTTCTACCTATAGGGATGATTCTCAACTGATCAACGATATTGTGGAAGATGTTTGGAAAAAGTTGTCCCTAAGGTATCCAAGTGAACTGAAAGACATTATTCAAATTGATGAAAACAATAAAGATATTGAATCATTGCTGAAGAAACATCAAAAAATTGGAATATGGGGTTTGGGAGGAATGGGAAAGACAACTATAGGTAGAAAAATATTTGCCAAACACTTTGCCCAATATGACTGTGTGTGCTTCTTGGAAAATGTAAGAGAAGATACAGAAAAGAATATACATAAAAAGCTGTCCTGCGAGTTATTAAGGCGACCGGTTACTGAATCTGAAGTTGTTGGACTTCACACATTCATTAAGAGGAGCCTAATTGGTAAGAAGGTTTTAATAGTTCTTGATGATATTGATGATATAGAACAACTGGAAGATCTGTATAGCTACCTTGGTGAGCTTGGACCAGACAGTAGACTCATTATCACAACAAGGAATAGTCATGTGCTTCGTGGAAGAGTTGATGCGATATACATGGTCAAAAAATGGAAAGTTGAAGAATCTTTGAAGCTTTTTAGCTTAGGAGCCTTCAAACAAGGACACCCTAAAGAAGGTTATGAGCTTCTCTCGAAAAGGGCAGTTGCATATGCAGGGGGAATTCCATTAGCCTTAAAAGTTTTGGGTTCTCATTTGTATTCCAGAGAACCTGATTTCTGGGAATCTGAATTGAAACATCTTGAGAACAATGTGGAATCCTTGAGCAAAATTGAGAAAGTTTTAAAAGGGAGTTATGATGGATTAACAATACGAGAGAAGGAAATCTTTCTAGACATTGCGTTCTTTTACAACAACGTAAATAAAGGTTTCTGTACGAGGATACTAGATGCATGTGGTCTTAATGCTACCAGTGGAATAAAACTTCTTGAAGAGAAAGCTCTTGTAACCATTTCAAGAAGTAATACAATACAAATGCATGACCTACTAAAAAAACTGGCTTTGCAGATAGTTCGGTACAAAAAATATTGTATTCGTAGAAGCCCAGGAGAGCGTAGTAGATTGTGTGATACTGAAGAAGTTCGTGATGTATTTAAAAGTAGCAAGGAAACTCATAAAGTTGAAGGCATACAATTTGATTTATCTCAAAAAGTAAAGTTACATGTTCGAGTTGACACATTCAGCAAGATGGAAGAATTAAGATTTCTTAGATTAAATGTCCCCCGGGGTAAGAAGAGATTGACTACTGTATCAATTCCTGACGATCTCATGCCATTTCCTGATAAATTGATGTATCTTGAGTGGAATGGATACCCGTTAAAGACTCTTCCACAACCTTTTGGTTCTGAGCTACTTGTTGAGATTCATCTGCAGAATAGTGATGTTGAATATCTTTGGCATGGGAAGCAGAAACTTGTGAATTTAAAAGGAATGAACCTAAGAGAATGCAAAAAGTTGATCAAACTCCCTGATTTGTCTGTGGCATCAAAACTCAAATGGCTACATCTTTCAGGTTGTGAAAGTTTATGCGAAGTCAACCCTTCTGTGTTTTCAAATGACACACTTGTTGCATTGATGCTAGATAGGTGCACAAAACTGAAAAATCTTATAAGTGATAAGCATTTGACATCTCTTGAGAAGATTGATGTATATGGATGCTCCAGCCTAAAGGTATTTTCAGTGTCCTCTAATTCAATTGAAAGGTTGAATTTAAGTAAAACAGGAACTGAAGTATTGCACTCATCAATCGGTGGTATGAGGAAGCTTGTGTTGCTCAATTTGGAAGGTTTAAGACTGACGAATCTACCAAATGAACTGTCTTGCCTGAGATCACTTGTTGATCTTCGCCTCTCTGATTGCGATTTAGTAACTAAATCGAAGTTAGAAGCTGTGTTTGATGGCCAACTGAGATCATTGAAAATACTATATTTGAAAGAATGTGGTAAATTGCTTGAACTACCTACAAATATCAATTTCTTACCATCATTGTATGAATTAAGACTAGATGGAAGCAATGTGGAGAAGTTGCCTGCTAGCATTGAGTACCTCTCAGAGTTATACATTCTGTCAATAAAAAATTGCAGGAAGCTTTGTTTTCTTCCAAAACTCCCTCCACACATCAAAGAGTTGCATGCCGATAACTGCACTTCATTGGTGAAGGTGTCTACTTTAAAGACTTTCTCAGAAAGCATGAAAGGAGAGAATAAATACATTTCATTCAAGAATGACATTGAGTTGGAGGAATCTTCACTCGTCCGTATGATTGAAGATGTCATATTAACAATGAAGAGTGCCGCACTGCACAATATGTCAATAGAAAGATTCAGTTTCAAAACCCATAGCTACAATTATGATACTGCTGTAGTGAGTTTACCAGGAAGCTCAGTTCCAGAGCATTTTGTATACCGAACAACGGATTCCTCCACTATTACCTTTAAAATGACTAAGTTCTACAATAGCTCACGGGGATTCATTTTATGTGTGGTTGTTTCTCCATCCAATAGACCGAGGGAGCGTAGTCATGGTGTTCAAATCCAATGTAAATGTTTTCAGGAAGATGGAATAAATGCAGGTGTTGCTTCTATGTGGCATCATAGAGATATTGAGGATTTGAATATGGATCATGTTTTTTTGTGGTATGATCCATACAATTATGACAGCATACGCCACTTTCCTAGCACTATCTCTTTTGAATTCAATGTTACAACTGATAGCGGGGAAAATGATGACTTTTTTAGCATCAAAGAGTGTGGAATCTATCCAATTTATACCTCAGAATTTCCTGCGCTTTTAGATAAACTCTCTTTAGAGAAGGACATAGAATTATCTTTGCGTCATATAATTAATAATGATTTAGAAATGCTTGAATCATTAAAAAGACATGAAGTCGGTGGAGAAAGTAGTGGAAAAGATTAA 3363 0.3654 MSHSFHDYDVFINFRGEDTRKTFTAQLHQALCKKNIKTFIDYNLRKGDEVANSLEMAILCSRISIVVFSENYATSKWCLHELAQIMRCRRYDDQVVIPVFYEVDPSDVRKQTGSYETAFARYITEVATSKKFEQTVIDWKAALTEAANISGWDSSTYRDDSQLINDIVEDVWKKLSLRYPSELKDIIQIDENNKDIESLLKKHQKIGIWGLGGMGKTTIGRKIFAKHFAQYDCVCFLENVREDTEKNIHKKLSCELLRRPVTESEVVGLHTFIKRSLIGKKVLIVLDDIDDIEQLEDLYSYLGELGPDSRLIITTRNSHVLRGRVDAIYMVKKWKVEESLKLFSLGAFKQGHPKEGYELLSKRAVAYAGGIPLALKVLGSHLYSREPDFWESELKHLENNVESLSKIEKVLKGSYDGLTIREKEIFLDIAFFYNNVNKGFCTRILDACGLNATSGIKLLEEKALVTISRSNTIQMHDLLKKLALQIVRYKKYCIRRSPGERSRLCDTEEVRDVFKSSKETHKVEGIQFDLSQKVKLHVRVDTFSKMEELRFLRLNVPRGKKRLTTVSIPDDLMPFPDKLMYLEWNGYPLKTLPQPFGSELLVEIHLQNSDVEYLWHGKQKLVNLKGMNLRECKKLIKLPDLSVASKLKWLHLSGCESLCEVNPSVFSNDTLVALMLDRCTKLKNLISDKHLTSLEKIDVYGCSSLKVFSVSSNSIERLNLSKTGTEVLHSSIGGMRKLVLLNLEGLRLTNLPNELSCLRSLVDLRLSDCDLVTKSKLEAVFDGQLRSLKILYLKECGKLLELPTNINFLPSLYELRLDGSNVEKLPASIEYLSELYILSIKNCRKLCFLPKLPPHIKELHADNCTSLVKVSTLKTFSESMKGENKYISFKNDIELEESSLVRMIEDVILTMKSAALHNMSIERFSFKTHSYNYDTAVVSLPGSSVPEHFVYRTTDSSTITFKMTKFYNSSRGFILCVVVSPSNRPRERSHGVQIQCKCFQEDGINAGVASMWHHRDIEDLNMDHVFLWYDPYNYDSIRHFPSTISFEFNVTTDSGENDDFFSIKECGIYPIYTSEFPALLDKLSLEKDIELSLRHIINNDLEMLESLKRHEVGGESSGKD 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00633 1120 Gene3D - 335 419 IPR042197 -
Trre16g00633 1120 Gene3D Ribonuclease Inhibitor 707 886 IPR032675 -
Trre16g00633 1120 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Trre16g00633 1120 Pfam NB-ARC domain 197 414 IPR002182 GO:0043531
Trre16g00633 1120 SUPERFAMILY L domain-like 528 866 - -
Trre16g00633 1120 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 711 IPR044974 GO:0006952
Trre16g00633 1120 SMART till_3 7 149 IPR000157 GO:0007165
Trre16g00633 1120 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Trre16g00633 1120 Pfam C-JID domain 940 1075 IPR045344 -
Trre16g00633 1120 Gene3D - 173 328 IPR027417 -
Trre16g00633 1120 Gene3D Ribonuclease Inhibitor 526 706 IPR032675 -
Trre16g00633 1120 SUPERFAMILY "Winged helix" DNA-binding domain 405 490 IPR036390 -
Trre16g00633 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 429 IPR027417 -
Trre16g00633 1120 PRINTS Disease resistance protein signature 689 705 - -
Trre16g00633 1120 PRINTS Disease resistance protein signature 276 290 - -
Trre16g00633 1120 PRINTS Disease resistance protein signature 205 220 - -
Trre16g00633 1120 PRINTS Disease resistance protein signature 368 382 - -
Trre16g00633 1120 Gene3D - 5 172 IPR035897 -
Trre16g00633 1120 Pfam TIR domain 8 181 IPR000157 GO:0007165
Trre16g00633 1120 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00633 Trre-Chr16 4746915 4752268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00633 4 815 WRKY Transcription Factor Family AT4G12020 31.699 5.50e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00633 - - cam:101488696 1464.13