Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00626 ATGGGTGGTTCAGGAAGCTGGTTTAAATCACTTATTCCACCAAAAAAGCCCTCCACCAATAATCAAGTGAAGGGTATTGATAAGAGAAAGAGAAAATGGAAGTTATGGAGGAATTCTTCAGAAAGTATTGGATTTGGAACCTCTATGAAGAAGGATCATGGTTTTGTTGCTTATGATAAATATTCATGTTCATCATTTGTGGTGAATGAACAAGCTTTTGCTGCTGCAATGGCTGCTGTAGTAAGAACTCCACACAAAGACTTCTTGGTGATTAAGCAGGAATGGTCTGCCATCCGTATCCAGTCTGCTTTTCGAGGTTTCTTGGCAAGAAGAGCTTTGAGGGCTCTGAAGGCATTGGTGAGGCTGCAAGCTATATTTCGTGGCCGGTTAGTAAGGAAACAAGCTGCTGTTACTCTAAGGTGCATGCAGGCTCTCGTGCGAGTTCAAGAACGCGTCAAGGCAAAGAATGCTAGGAATTCTCCAGAAAGGAAAGCTAAGCAGAAGCTATTAAATGAGCAGAACAATCAAGATGATTCTGTTAAACAAGCTGAGAAAGGATGGTGTGACATACCAGGAACTGTGGAAGAGATTAAAGCAAAACTTAAAATGAGGCAAGAAGGAGCAATTAGGAGAGATAGAACATTGTCATACTCCATTTCCACTCAGACATCAACGGTGAGTTATAGTCCAACCTCAAGAGCTTCTAAGTCATCGACTCCTCTCAATAACCGAAGCTTGGACGGTAAGATCTTGTTAGAACGCTGGATTGCGGCTAAGCCATGGGAGAGCAGGTTGATGGGAGACATTTACTTGGACTCACCTAACATGACTCCATTGTCCAAGAAGAATGAGAATGTCGAACTTTCCTTTAACTCATTTGGCTTAAAATCTAGAAGGAATGGTGCAACAATTAGAAGTTCATCTAAATCTCTTACAACAAGCCAATCAACTCCGTCGTCTTCAGCTGTAAGCTCTGAATGTATGTATGATGATAGTCCTTTATCAACTTCATGCACATCAGAATCACCAGCCAAGGTGGAAGATACAAAGGAAAGGAAGATTGGGAAACCGAGCTACACAAGTTTGACGGCTTCAACCAAAGCTAAACTGAAAGCAAGTAGACATTCGTCTCCGAATTTGAAGAGACTCTTTATGGATGATGATTATCTATCTCATAGCACGAGAACAAACATTCTAAGCGCAGATACTAGAAGCATATCTGGTTCATATTCTTCGGCTAATATATGGAAGGATCTTTATGCAACGCCTTTAAGGACAAGTTATCAAAAGCGATTTACATTGGGAGATAAATAG 1314 0.4102 MGGSGSWFKSLIPPKKPSTNNQVKGIDKRKRKWKLWRNSSESIGFGTSMKKDHGFVAYDKYSCSSFVVNEQAFAAAMAAVVRTPHKDFLVIKQEWSAIRIQSAFRGFLARRALRALKALVRLQAIFRGRLVRKQAAVTLRCMQALVRVQERVKAKNARNSPERKAKQKLLNEQNNQDDSVKQAEKGWCDIPGTVEEIKAKLKMRQEGAIRRDRTLSYSISTQTSTVSYSPTSRASKSSTPLNNRSLDGKILLERWIAAKPWESRLMGDIYLDSPNMTPLSKKNENVELSFNSFGLKSRRNGATIRSSSKSLTTSQSTPSSSAVSSECMYDDSPLSTSCTSESPAKVEDTKERKIGKPSYTSLTASTKAKLKASRHSSPNLKRLFMDDDYLSHSTRTNILSADTRSISGSYSSANIWKDLYATPLRTSYQKRFTLGDK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00626 437 PANTHER IQ-DOMAIN 5-RELATED 1 396 - -
Trre16g00626 437 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Trre16g00626 437 Pfam IQ calmodulin-binding motif 117 134 IPR000048 GO:0005515
Trre16g00626 437 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Trre16g00626 437 MobiDBLite consensus disorder prediction 304 343 - -
Trre16g00626 437 MobiDBLite consensus disorder prediction 153 171 - -
Trre16g00626 437 Gene3D - 90 151 - -
Trre16g00626 437 MobiDBLite consensus disorder prediction 304 360 - -
Trre16g00626 437 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Trre16g00626 437 SMART iq_5 115 136 IPR000048 GO:0005515
Trre16g00626 437 SMART iq_5 92 114 IPR000048 GO:0005515
Trre16g00626 437 MobiDBLite consensus disorder prediction 153 184 - -
Trre16g00626 437 MobiDBLite consensus disorder prediction 1 24 - -
Trre16g00626 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00626 Trre-Chr16 4682086 4685104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00626 1 420 IQD Protein Family AT1G72670 43.326 4.59e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00626 - - gmx:100784093 467.233