Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00625 ATGGTACATCACTCTTGTTGCAACAAACAGAAGGTTAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATACATTACAACTTATGGACATGGTTGTTGGAGCTCAGTTCCAAAACTTGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGCTGCACTCATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATTGCGAAGCACTTACCGGGAAGAACAGACAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAAAAACTTTTTTCTCATGATTTTATTCCATCTTTGACCACATTTTCTAATATTCACACATCTTACAATATTGGTTCTATTGATAGTTTCTTCCCTAATCCTAATATGATCCTAAACATCAATCATCACCATCAAGATCAGCTATACCTTCCAAACTCATCTCCAAATCAACAAGGCTTTCACCAAATTGATACAAAGGTAGACATCAATAATCAATATAAATCCAATTTCATTCACATTCAAAATCCTATTCAAGAAATAGTAGAACCAATATCAAACCCTTCACCTTATGAAGATACATGGTCATTGGATTGTCTACCTCTTCATCTCATTTCAAATCAAGAAAATCAAATTTCTATTTCTAAAAGTGATACCACCCCACTTAATAGTGTTGACAAATTAATCAACCCAGTTGAGTTAATGCAACAATATGATCAATGTCATGATCATCCTCACTTGGTTGAACTTGATCAACCAATTGTGCCTAAATTAGTCAATGATCAAAGCCTTGAGGATTATGTTTGTAGCATCCTAGATTCATCTAATTCCCAAGAACATGAGGTTCCAACAAATATTGAGTGCTACACATCTAGTTTTGTTTATCCACAAGATCAAATTTTAGAAGCTAATCAAATATTAGATTACAATATTGATGCACTCATGTCATCATTGCCATCCTCAAGTAGCCAAAATGTAACAAACCATATAATGACTTTAGGATGGGAGCCTTAA 1071 0.3455 MVHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDFIPSLTTFSNIHTSYNIGSIDSFFPNPNMILNINHHHQDQLYLPNSSPNQQGFHQIDTKVDINNQYKSNFIHIQNPIQEIVEPISNPSPYEDTWSLDCLPLHLISNQENQISISKSDTTPLNSVDKLINPVELMQQYDQCHDHPHLVELDQPIVPKLVNDQSLEDYVCSILDSSNSQEHEVPTNIECYTSSFVYPQDQILEANQILDYNIDALMSSLPSSSSQNVTNHIMTLGWEP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00625 356 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre16g00625 356 Gene3D - 11 67 - -
Trre16g00625 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre16g00625 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre16g00625 356 Gene3D - 69 116 - -
Trre16g00625 356 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g00625 356 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Trre16g00625 356 CDD SANT 17 61 IPR001005 -
Trre16g00625 356 FunFam MYB transcription factor 6 66 - -
Trre16g00625 356 FunFam Myb transcription factor 69 116 - -
Trre16g00625 356 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g00625 356 SMART sant 13 63 IPR001005 -
Trre16g00625 356 SMART sant 66 114 IPR001005 -
Trre16g00625 356 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g00625 356 PANTHER MYB DOMAIN PROTEIN 55 1 282 - -
Trre16g00625 356 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00625 Trre-Chr16 4669470 4670947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00625 1 118 MYB Transcription Factor Family AT3G13890 94.068 1.48e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g00625 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00625 K09422 - gmx:100785147 436.802