Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00624 ATGGCACACACTTGTTGCAACAAAGAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAATTACATCACAACTCATGGACAAGGTTGTTGGAGCTCTATTCCAAAACTGGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCAGATTTGAAACGTGGAAGTTTCTCTAATCAAGAAGCTGCACTCATTATAGAACTTCACAGAATTTTAGGAAATAGGTGGGCTCAGATTGCCAAGCACTTACCAGGAAGAACAGATAATGAAGTGAAAAACTTTTGGAATTCATCCGTAAAGAAGAAAATCCTTTCTCATGATATTATTCCATCTTTCAACACATTTTCTAATATTCACATCCCCTTCAATCATCATCACCATCAAGATCACCAATATTTTCCAACCTCATCTCAAAATTTAAAAAGTAATTTTTTCCAAATTGACACAAAGGTGGACCACAATAATAATCATTACAATGCCAATTTCCTTCACATTCAAAATCCTCCTTGTTATGAAGATACATGGTCATTGGATTGTGTACCTCTTCATCTCAATTCAAATCAAGAAAATCAACTTAATATTGTTGGCAAATTAATCAACCCAACTGCATTAATGCAACAATATGATCAATGTCATGATGATGACTTGTTTGAACTTGAATCCATTGTGCCTAAAGTGAGTGATCAAAGTTTTGAGGATTATTATGCTAGCATCCTAGATTCATCTAATATTAATAATGTTGACAAATTAATCAACCCAATTGAATTAATGCAACAATATGATAAATGTCATGATCATAATCACTTGGTTGAATTTGATCATCAACCAACTGTGCCTAAATTATTCAATGATCAAAACCTTGAGGATTATGCTTGTAGCTTCCAAGAATCATCTAATTCCAAAGCACATGAATCTCCAACAAAAATTCATGAGGGCTACACATCAAGTACTATTTATTCACAAGATCACACTTTGGAAGCTAATCAATTTGATTACAATATTGATGCTCTTATATCATCATTGCCATCCTCAAGCAGCTAA 1077 0.338 MAHTCCNKEKVKRGLWSPEEDEKLINYITTHGQGCWSSIPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSNQEAALIIELHRILGNRWAQIAKHLPGRTDNEVKNFWNSSVKKKILSHDIIPSFNTFSNIHIPFNHHHHQDHQYFPTSSQNLKSNFFQIDTKVDHNNNHYNANFLHIQNPPCYEDTWSLDCVPLHLNSNQENQLNIVGKLINPTALMQQYDQCHDDDLFELESIVPKVSDQSFEDYYASILDSSNINNVDKLINPIELMQQYDKCHDHNHLVEFDHQPTVPKLFNDQNLEDYACSFQESSNSKAHESPTKIHEGYTSSTIYSQDHTLEANQFDYNIDALISSLPSSSS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00624 358 PANTHER MYB DOMAIN PROTEIN 55 1 300 - -
Trre16g00624 358 CDD SANT 68 108 IPR001005 -
Trre16g00624 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Trre16g00624 358 Gene3D - 68 115 - -
Trre16g00624 358 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre16g00624 358 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Trre16g00624 358 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Trre16g00624 358 SMART sant 65 113 IPR001005 -
Trre16g00624 358 SMART sant 12 62 IPR001005 -
Trre16g00624 358 CDD SANT 16 60 IPR001005 -
Trre16g00624 358 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre16g00624 358 Gene3D - 10 66 - -
Trre16g00624 358 FunFam MYB transcription factor 5 65 - -
Trre16g00624 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Trre16g00624 358 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre16g00624 358 FunFam Myb transcription factor 68 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00624 Trre-Chr16 4656006 4657598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00624 3 117 MYB Transcription Factor Family AT3G13890 88.696 2.58e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g00624 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00624 K09422 - gmx:100785147 338.961