Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00616 ATGGGATCATGCCTCTCAGGAGCTTCTTCAGCACCTTCTCCTCCTAACACTAATTATTATTATGAATCTCCGTCTAAATTTTATAACAATACACGAGATTTGAATCCGGAAATGCGGTTGCATCGTATTCCTGGAAGAATATTTTTGAATGGTTCATCTCCTTTTGCATCCTTGTTTTGTAAGCAAGGTAGCAAAGGCATCAACCAGGATGCAATGCTTCTTTGGGAGAATTTTGGTTCCATGGAGGACTGCGTATTTTGTGGTGTATTTGACGGCCATGGACAATATGGACATGTGGTCGCCAAGAAAGTTAGAGATGCTTTCCCTTTAAAGATAATGAATGAATGGAATTCGCGTTGCCGTTATGATGATAACAATAATAATAAAAACAATAACCATTTCAAGATAATGAGAGAATCCTTTGTGAAAGCATCTAAGTCTATGGACAGAGAACTCAAACAACAACATTCCATGGATTCTTATGGAAGTGGGACAACTGCAGTTACCTTGATCAAGAAGGGACAAGAACTAGTTATTGCAAATGTTGGAGACTCGAGAGCGGTTTTAGGTACCCGAGATCCGGATGGTTCTCTTATTGCACTTCAACTGACAACTGACCTGAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATAATGATGTGCAAAGGAAGGGTGTTTACCCTTGAGAACGAAGGAATTGCTCGACTTTGGCTCCCCAATGTTGATTCCCCGGGGCTAGCTATGGCACGCGCTTTTGGTGATTTTTGCCTCAAGGACTTTGGGCTCATATCTATTCCAGAAGTCTCCTATCGCCGCCTCACTGACCAGGATCAATTTGTTGTCTTAGCCACAGATGGGATTTGGGATGTTATGTCCAACGAACAAGTTGTGAACATCGTCGCATCTGCTCCGCGATCTTCTGCTGCTAAACTACTTGTTGAGGCAGCTGTTCAAGCATGGAGGGCTAAACTTCCAAGTTCGAAGCCTGATGATTGCTCTGCAATATGTCTCTTCTTTCATCCACATGGAAATGCGACACCTAACACTAATACTAGTATCGCTATGAGCGCTAGAGAATCACCCTGCAAAACTAAACAAAAGCACCAATAG 1110 0.427 MGSCLSGASSAPSPPNTNYYYESPSKFYNNTRDLNPEMRLHRIPGRIFLNGSSPFASLFCKQGSKGINQDAMLLWENFGSMEDCVFCGVFDGHGQYGHVVAKKVRDAFPLKIMNEWNSRCRYDDNNNNKNNNHFKIMRESFVKASKSMDRELKQQHSMDSYGSGTTAVTLIKKGQELVIANVGDSRAVLGTRDPDGSLIALQLTTDLKPNLPREAERIMMCKGRVFTLENEGIARLWLPNVDSPGLAMARAFGDFCLKDFGLISIPEVSYRRLTDQDQFVVLATDGIWDVMSNEQVVNIVASAPRSSAAKLLVEAAVQAWRAKLPSSKPDDCSAICLFFHPHGNATPNTNTSIAMSARESPCKTKQKHQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00616 369 CDD PP2Cc 55 339 IPR001932 -
Trre16g00616 369 Gene3D - 52 340 IPR036457 -
Trre16g00616 369 ProSiteProfiles PPM-type phosphatase domain profile. 55 339 IPR001932 -
Trre16g00616 369 PANTHER PROTEIN PHOSPHATASE 51 337 IPR015655 GO:0004722|GO:0006470
Trre16g00616 369 SMART PP2C_4 46 337 IPR001932 -
Trre16g00616 369 Pfam Protein phosphatase 2C 69 306 IPR001932 -
Trre16g00616 369 SUPERFAMILY PP2C-like 52 342 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00616 Trre-Chr16 4597287 4598884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00616 1 354 PP2C-type Phosphatase Gene Family AT3G02750 46.953 2.32e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00616 - - tpra:123883030 661.373