Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00615 ATGGGATCATGCCTCTCAGGAGCTTCTTCAGCACCTTCTCCTCCTAACACTAATTATTATTATGAATCTCCGTCTAAATTTTATAACAATACACGAGATTTGAATCCGGAAATGCGGTTGCATCGTATTCCTGGAAGAATATTTTTGAATGGTTCATCTCCTTTTGCATCCTTGTTTTGTAAGCAAGGTAGCAAAGGCATCAACCAGGATGCAATGCTTCTTTGGGAGAATTTTGGTTCCATGGAGGACTGCGTATTTTGTGGTGTATTTGACGGCCATGGACAATATGGACATGTGGTCGCCAAGAAAGTTAGAGATGCTTTCCCTTTAAAGATAATGAATGAATGGAATTCGCGTTGCCGTTATGATGATAACAATAATAATAAAAACAATAACCATTTCAAGATAATGAGAGAATCCTTTGTGAAAGCATCTAAGTCTATGGACAGAGAACTCAAACAACAACATTCCATGGATTCTTATGGAAGTGGGACAACTGCAGGACAAGAACTAGTTATTGCAAATGTTGGAGACTCGAGAGCGGTTTTAGGTACCCGAGATCCGGATGGTTCTCTTATTGCACTTCAACTGACAACTGACCTGAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATAATGATGTGCAAAGGAAGGGTGTTTACCCTTGAGAACGAAGGAATTGCTCGACTTTGGCTCCCCAATGTTGATTCCCCGGGGCTAGCTATGGCACGCGCTTTTGGTGATTTTTGCCTCAAGGACTTTGGGCTCATATCTATTCCAGAAGTCTCCTATCGCCGCCTCACTGACCAGGATCAATTTGTTGTCTTAGCCACAGATGGGATTTGGGATGTTATGTCCAACGAACAAGTTGTGAACATCGTCGCATCTGCTCCGCGATCTTCTGCTGCTAAACTACTTGTTGAGGCAGCTGTTCAAGCATGGAGGGCTAAACTTCCAAGTTCGAAGCCTGATGATTGCTCTGCAATATGTCTCTTCTTTCATCCACATGGAAATGCGACACCTAACACTAATACTAGTATCGCTATGAGCGCTAGAGAATCACCCTGCAAAACTAAACAAAAGCACCAATAG 1092 0.4277 MGSCLSGASSAPSPPNTNYYYESPSKFYNNTRDLNPEMRLHRIPGRIFLNGSSPFASLFCKQGSKGINQDAMLLWENFGSMEDCVFCGVFDGHGQYGHVVAKKVRDAFPLKIMNEWNSRCRYDDNNNNKNNNHFKIMRESFVKASKSMDRELKQQHSMDSYGSGTTAGQELVIANVGDSRAVLGTRDPDGSLIALQLTTDLKPNLPREAERIMMCKGRVFTLENEGIARLWLPNVDSPGLAMARAFGDFCLKDFGLISIPEVSYRRLTDQDQFVVLATDGIWDVMSNEQVVNIVASAPRSSAAKLLVEAAVQAWRAKLPSSKPDDCSAICLFFHPHGNATPNTNTSIAMSARESPCKTKQKHQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00615 363 CDD PP2Cc 55 333 IPR001932 -
Trre16g00615 363 Gene3D - 52 334 IPR036457 -
Trre16g00615 363 Pfam Protein phosphatase 2C 69 300 IPR001932 -
Trre16g00615 363 ProSiteProfiles PPM-type phosphatase domain profile. 55 333 IPR001932 -
Trre16g00615 363 PANTHER PROTEIN PHOSPHATASE 51 331 IPR015655 GO:0004722|GO:0006470
Trre16g00615 363 SMART PP2C_4 46 331 IPR001932 -
Trre16g00615 363 SUPERFAMILY PP2C-like 52 336 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00615 Trre-Chr16 4597287 4598884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00615 1 348 PP2C-type Phosphatase Gene Family AT3G02750 45.824 3.69e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00615 - - tpra:123883030 646.351