Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00614 ATGGTAAAAGGTTTTATGTTCCAACAACAACAACAACAACCTCAGCAACAACAAGTGATGGAAGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGAAATTGGTACTAGTTACTCTCAAGAACAATACTTAGCTCCTCCAACACAAACAGTGAAGAAAAAAAGAAACCTTCCTGGTAACCCAGACCCAGAAGCTGAGGTAATAGCTTTATCACCAAAGAGTTTACTAGCAAAAAACAGATTCATATGTGAGATCTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGACATAACTTACCATGGAAGTTGAAACAAAGAACAAGTAAAGAAATTAGAAAGAAAGTTTATGTATGTCCAGAAACAACTTGTGTTCATCATGATCCATCAAGAGCATTAGGAGATTTAACTGGAATCAAAAAGCACTTTTGCAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACCAGAGAGAATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACACATAGAGCATTTTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCTATGACAAACATTACAATTCCAAATTTACCCTCACATTCACAACAAGAACAACCTTCATCATCATCTTCTCATCACATGATTAATCTACAAACCCAATTCAATAATCCTCAATCTCAAGAGCTTAATCATGTTTTTCAATTAAAAAAAGAACAACAACAACAAAATCAAAATCAAAGTTTCAATCTTTCAGAAATTCCACCTTGGCTTGGCCCACCTAATAATGTTGATAATAATAATCTATCATCAACATCAATTTTCTCTCAAAATAATCATTTTTCAACACATCATCAAGAAAACCCTAACCCTAGGGAATTGGATTCAGTAAAGTCGAATTTACCATGCATTCACTTTATAGCCGTCAGATCTAATCAATATATTTTGATATATTCATCCAAGGCTACTGCATTATTGCAGAAAGCAGCTCAAATGGGTGCTACAATGAACATAAATGGTTCTGCTTCTTCACCAGCTATGAATATTAGGACCCACCAACTTGATTCTGATTCTCTCAACAATGTCTCTGGAGCACATTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATAGAAAAACAGCAGCGGATGAAGGTGGTGGAGGCGGCGGTGGAAATGAAGGATTGACAAGAGATTTCTTGGGGCTTAGGCCATTGTCTCATAGTGATATTTTAAGTATTGCAGGGATTGGAAATTGCATGAATGATGAATCACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG 1404 0.3561 MVKGFMFQQQQQQPQQQQVMEENMSNLTSASGEASEIGTSYSQEQYLAPPTQTVKKKRNLPGNPDPEAEVIALSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTRENRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNITIPNLPSHSQQEQPSSSSSHHMINLQTQFNNPQSQELNHVFQLKKEQQQQNQNQSFNLSEIPPWLGPPNNVDNNNLSSTSIFSQNNHFSTHHQENPNPRELDSVKSNLPCIHFIAVRSNQYILIYSSKATALLQKAAQMGATMNINGSASSPAMNIRTHQLDSDSLNNVSGAHFDEMFGGIMNSKKDRKTAADEGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDESQNQSQKPSWQG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00614 467 MobiDBLite consensus disorder prediction 1 58 - -
Trre16g00614 467 Pfam Zinc-finger double-stranded RNA-binding 84 106 IPR022755 -
Trre16g00614 467 MobiDBLite consensus disorder prediction 1 63 - -
Trre16g00614 467 Gene3D Classic Zinc Finger 64 134 - -
Trre16g00614 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 452 IPR031140 -
Trre16g00614 467 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
Trre16g00614 467 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Trre16g00614 467 MobiDBLite consensus disorder prediction 407 427 - -
Trre16g00614 467 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Trre16g00614 467 SMART c2h2final6 160 180 IPR013087 -
Trre16g00614 467 SMART c2h2final6 125 155 IPR013087 -
Trre16g00614 467 SMART c2h2final6 84 106 IPR013087 -
Trre16g00614 467 FunFam protein indeterminate-domain 12-like 63 131 - -
Trre16g00614 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00614 Trre-Chr16 4588128 4590932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00614 20 453 IDZ Gene Family AT1G55110 48.718 1.42e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g00614 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00614 K25870 - cave:132187040 496.508