Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00610 ATGAGAACAATCATTATTCAATCTGATATGCGGGCCAATGATCCTGTCGGCGGTTGTTATAAATATATTCAAGATCTTCAAGCTCAAATTGAATATTATAAAACAGAACTTGATCTTGTTCTTCAACAACTCGCGGTTTTTCGAGCACAATCTAATGATCATCATCATCAACAACAACAAGTAGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTGTTAGGTTATTATAATCCATCTGGATCTGTTGTTCCGGCTACCACGCCGGCTCATTATCATTACAATGTTCAACAACAAGTGGTGACACCATTACAAAACATGAACAAGAACAATACCTTATGTAATGCTAGTGATGAGTATGATCATAAGCCAACTCTTGATATACCTTGTGACGAAAGAAATGAATTAGGATTCGAATCTGGAGAAATACTTCACCACAGTGATGAAGCAGTTTTGTTCAAGATAGATGATGGATTAATTAAAGCAGAGGGTGGCTACATTCAAGAAACACAAGCTCAAGAACAAGATCATGATCTAAAAGGTGCAGCAACATTGTTTACTCTAACAAATTGTACTAGTTGA 588 0.352 MRTIIIQSDMRANDPVGGCYKYIQDLQAQIEYYKTELDLVLQQLAVFRAQSNDHHHQQQQVVNYGDQVIMNSDSLLGYYNPSGSVVPATTPAHYHYNVQQQVVTPLQNMNKNNTLCNASDEYDHKPTLDIPCDERNELGFESGEILHHSDEAVLFKIDDGLIKAEGGYIQETQAQEQDHDLKGAATLFTLTNCTS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00610 195 Pfam Lateral organ boundaries (LOB) domain 1 39 IPR004883 -
Trre16g00610 195 Coils Coil 23 43 - -
Trre16g00610 195 ProSiteProfiles LOB domain profile. 1 44 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00610 Trre-Chr16 4557864 4559079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00610 1 61 AS2 family AT3G13850 59.016 4.36e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g00610 LOB 8.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00610 - - cam:101515615 258.455