Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00602 ATGGCTATGATTTCTTCTTCTTACTCTCACTCTGCTGCTACAGCATCTCTGAAAAAGTATGATGTTTTCATCAGCTTTAGAGGTGAGGACACTCGCGCTGGTTTCACAAGTCATCTTCATGATGCCTTGAAGAGAAAATATTTGGAGACATACATAGACTACAGGATTGAAAAAGGAAACCAAGTTTGGGCAGAACTTGAGAAAGCAATCAAAGATTCCACTTTGTTTCTTGTCGTGTTCTCGGAGAACTATGCAGATTCAACGTGGTGTTTAAATGAACTCGTTGAAATAATGGAGTGTAACAAAAACGAGGACAACGTTGTTGTTATTCCAGTGTTCTACCAAATTGACCCTTCAGATGTAAGGAAACAAACAGGGAGTTATGGCACTGCTTTGGCAAAACACAAGAAGCAAGGTGGCAAGAATAATGACAAGATGATGCAAAATTGGAAGAATTCTCTTTCTCAAGCAGCTAATTTATCTGGTTTTCATTCTGCCACATACAGGACTGAATCTAATTTGATTGAAGACATTACGAGAGTTGTATTAGAGAAGTTAAACCACAACAACACAAAAGATCTCACATGTAATTTCATAATGGATGAAAACTACTCGACAGTTCTGTCTTCAATAAAACAAATTGATTCAAAAGAAGTTCAAAGCATTGGACTTTGGGGTATGGGAGGCATAGGTAAGACAACACTTGCTACTGCTATCTATAGCAAAATCTGTTATCAGTATGAAGGTAGATGCTTCTTAGACAATGTTACAGAAGTTTCAAAGATGCATGGAATCAACGATACATTCAACAAACTTCTTTGCAAGTTACTAAGCGATGATCTTGATTTTGACACTTCAAAAGTAATACCATCCACGATCTTTAGAAGACTCAAACGCATGAAATCTTTGATTGTACTAGATGATGTACATACTTTAGAACTTCTGCAAAATTTGATCGGAGTAGGACATGGTTGGCTAGGAGCAGGTAGCACGGTCATTGTGACGACAAGGGATAAACATGTGCTGATAAGTGGAGGAATTGAAAAAATTCATCAAGTTAAGAAGATGAACTCCCAAAATTCTCTCCAACTTTTTAGCTTGAATGCTTTTGACAAAGTATTACCTACAGAGGGATATCTGGAGCTCTCAGAAAAAGCTATTGATTATGCAGAAGGCAACCCTTTGGCTCTGAAAGTATTAGGATCATTTCTTCGTTGCAGAAGTGAATTAGAATGGAACAGCGCACTAGCTAAACTAAAGGAAACTCCCAATGCAGAAATTGATAGGATATTGAGATGGAGTTATAATGAATTGGATGATAAAGAGAAAAACATATTTTTGGACATAGCATGCGTTTTGAAAGGTTATAAACGGGATGAGGTAACACAAATATTAAATGAGTGTGGTTTCTTCGCAGATATAGGTATAAGACTTCTTTTAGACAAGGCTCTTATTAGTGTTGACTCTAAAAATTGCATACAAATGCATGACTTGATAAAAGATATTGGAAAACAAATTGTTCGCGAAGAATCTCCTAAAAATCCCGGACAACGCAGTAGATTTTGTGATCCTAAGGAAGTTTGTGATGTGTTGAAAAATAATAGAGGAACTGAGATGGTTGAAGCCATATTTTTTGATGCTACTGAATATACAAATATTAGATTGAGTCCCAAAGCATTTGAAAAGATGGTAAACTTAAGGTTACTTGTTTTTCGAGACCACAAGGAAATTAAATCTGTAAGCCTTCCACATGGTCTTGACTTATTGCCAGAAAATTTGAGATATTTCTTGTGGGATGGATATCCATCGAAGTCTCTGCCACCAACCTTTTGTCCTAAAATGCTTGTAAAGCTCTCCATGCAAAAAAGTAGTGTATCAAAACTTTGGGATAAGGAAATGAATTTGCCAAATTTAGAGAGAATTGACCTCACTGGGTCCAAAAAGTTGATAGAGTGTCCAAATATGTCTGGTTCCCCGAATCTAACACATTTAAAACTCGAGCATTGTGAAAGCATGACTGAAGTTGATTCATCAATTTTCTCTCTCCAAAAGCTTCGGTCTTTAAAGGTGACGGGATGTAAATCACTTAAGAGCCTTTCAAGTAGCACTTGTTCACCAGCCCTCGAAGAATTTCATGCTTTTTATTGCGTCAATCTCCAAGACTTCTCAGTCACATTTTCTTCCACTGATCATTTGGATTTGGGTTTAACACATGGTTGGAATGGGAATGTACTTCCATCATCACTGTTGAATAAAAATAATCTGAAAATTTTGTACTTTCCTCTGATTGAATGTCTTGCGGATCTTCCTGAAAACTTTGCAAATTATATTTGGCTTGAGAATCCACCGAATTGTAAACATGACCCTTCCATCATCTTACATAAAGTACTCCCTAGTCCTGCCTTCACCAGTTTAAAACAGTTATCCATTTCTTATATCCCTACCTTGTCTGAAATCCCAGACAATATCTCCTTACTATCCTCATTAGAGTATTTAAAACTAGTTGCTATTGCCATTAGAAGCTTGCCTGAAACCATGAAGTATCTTCCCAAGCTCCTTCAACTTAGTGTTTACGATTGTGAAATGCTTCAATCTATTCCGGCGCTTTCACTCAATCTAATCGATTTCACTGTCTCAAATTGTGAATCTCTTGAGACAGTGTTGAGTTCAATGGGGGAAACATATAATCACAAACCCAATCTTTATACTGTTTTTCTCCTTAACTGCAAAAAATTGGATTCTCATTCGTACCATAAAGTTCTGAAAGATGCTATTTCTGGGATTGAAGTTGGAGCAAATGAAGAAAATGATACCATTCAGTACCTGTTACCTGTAATGCCAGGCATAGAATATTGGTGCGATTACAGTTCTACACAAGTCTCTTTCACTATTGAGCTTCCTCCTAATTTGTTTGGTTTTGCCTACTACTTGGTTCTTTCTCAAGGTCATGTGCGAGATGGTGTACGTATTCGATGTGAGTGCTACTTGGACAATATTTCAGGTGAAAGGATCTGTATAAAAAGTTTCCCAAGTGCCAACATCTTCAAATTTTACTGGTGTTATGGTAGTAACTATAAAATCCACATGAAGTCAGATCATGTGGTTTTATGGTATGACCCAGTAAGTTGCAAGAAGATAATGGAAGAGGTAAAAGCCATTAATGATGTGAACAGCACCAATTATAATCCAAAGCTTACATTTACATTCTTTATTGATGAAAGAAAACGTGAAGTAACAATACAGAAGTGTGGTGTTCGCTGGATATATGAAGGAGAAATGGTTACTTCAACAATTTTTGAAACCCTTGATGAAGAAGAAACTGCGTCTTCATCATATTTTCAATCCAATGATCAAGAACAAACAGTACCTCCAACAATTATTGAATCAGATGATCAAATACAAATAGTTCCTCCAACAAATTTCGAATTAGATGAAACAAAAGACTTGAGATGTTTACTTGAAGAACTCATGCATATTGGATTTGGTGGAGACCACATGAACTATTTGTTAGTTGGAGAGGAAAAAAAAGAATGA 3534 0.3645 MAMISSSYSHSAATASLKKYDVFISFRGEDTRAGFTSHLHDALKRKYLETYIDYRIEKGNQVWAELEKAIKDSTLFLVVFSENYADSTWCLNELVEIMECNKNEDNVVVIPVFYQIDPSDVRKQTGSYGTALAKHKKQGGKNNDKMMQNWKNSLSQAANLSGFHSATYRTESNLIEDITRVVLEKLNHNNTKDLTCNFIMDENYSTVLSSIKQIDSKEVQSIGLWGMGGIGKTTLATAIYSKICYQYEGRCFLDNVTEVSKMHGINDTFNKLLCKLLSDDLDFDTSKVIPSTIFRRLKRMKSLIVLDDVHTLELLQNLIGVGHGWLGAGSTVIVTTRDKHVLISGGIEKIHQVKKMNSQNSLQLFSLNAFDKVLPTEGYLELSEKAIDYAEGNPLALKVLGSFLRCRSELEWNSALAKLKETPNAEIDRILRWSYNELDDKEKNIFLDIACVLKGYKRDEVTQILNECGFFADIGIRLLLDKALISVDSKNCIQMHDLIKDIGKQIVREESPKNPGQRSRFCDPKEVCDVLKNNRGTEMVEAIFFDATEYTNIRLSPKAFEKMVNLRLLVFRDHKEIKSVSLPHGLDLLPENLRYFLWDGYPSKSLPPTFCPKMLVKLSMQKSSVSKLWDKEMNLPNLERIDLTGSKKLIECPNMSGSPNLTHLKLEHCESMTEVDSSIFSLQKLRSLKVTGCKSLKSLSSSTCSPALEEFHAFYCVNLQDFSVTFSSTDHLDLGLTHGWNGNVLPSSLLNKNNLKILYFPLIECLADLPENFANYIWLENPPNCKHDPSIILHKVLPSPAFTSLKQLSISYIPTLSEIPDNISLLSSLEYLKLVAIAIRSLPETMKYLPKLLQLSVYDCEMLQSIPALSLNLIDFTVSNCESLETVLSSMGETYNHKPNLYTVFLLNCKKLDSHSYHKVLKDAISGIEVGANEENDTIQYLLPVMPGIEYWCDYSSTQVSFTIELPPNLFGFAYYLVLSQGHVRDGVRIRCECYLDNISGERICIKSFPSANIFKFYWCYGSNYKIHMKSDHVVLWYDPVSCKKIMEEVKAINDVNSTNYNPKLTFTFFIDERKREVTIQKCGVRWIYEGEMVTSTIFETLDEEETASSSYFQSNDQEQTVPPTIIESDDQIQIVPPTNFELDETKDLRCLLEELMHIGFGGDHMNYLLVGEEKKE 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00602 1177 SMART AAA_5 218 357 IPR003593 GO:0016887
Trre16g00602 1177 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Trre16g00602 1177 Gene3D Ribonuclease Inhibitor 530 736 IPR032675 -
Trre16g00602 1177 ProSiteProfiles TIR domain profile. 18 186 IPR000157 GO:0007165
Trre16g00602 1177 Gene3D Ribonuclease Inhibitor 790 942 IPR032675 -
Trre16g00602 1177 Pfam TIR domain 19 193 IPR000157 GO:0007165
Trre16g00602 1177 SUPERFAMILY L domain-like 549 914 - -
Trre16g00602 1177 Gene3D - 355 439 IPR042197 -
Trre16g00602 1177 Gene3D - 17 182 IPR035897 -
Trre16g00602 1177 SUPERFAMILY "Winged helix" DNA-binding domain 426 532 IPR036390 -
Trre16g00602 1177 PRINTS Disease resistance protein signature 390 404 - -
Trre16g00602 1177 PRINTS Disease resistance protein signature 633 649 - -
Trre16g00602 1177 PRINTS Disease resistance protein signature 221 236 - -
Trre16g00602 1177 PRINTS Disease resistance protein signature 296 310 - -
Trre16g00602 1177 Pfam NB-ARC domain 213 438 IPR002182 GO:0043531
Trre16g00602 1177 Gene3D - 183 346 IPR027417 -
Trre16g00602 1177 SMART till_3 19 160 IPR000157 GO:0007165
Trre16g00602 1177 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 772 IPR044974 GO:0006952
Trre16g00602 1177 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Trre16g00602 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00602 Trre-Chr16 4477955 4482493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00602 15 859 WRKY Transcription Factor Family AT4G12020 30.966 3.66e-94 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00602 - - psat:127076382 1353.96