Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00598 ATGGCTTCTTCTTCTTCCTCTCACTCCATTGTTGTGAAAAAGTATGATATTTTCATCAGTTTTAGAGGCGATGACACTCGCGTTGGTTTCACAAGCCATCTTCACGCTGCTTTGAAGCGAAGCAATTTGGAGACGTACATAGACTGCAGAATTGAAAAAGGAGACCAAGTTTGGGCAGAACTTGTGAAAACAATCAAAGATTCTAGTCTGTTTCTTGTCATCTTCTCGGAGAACTATGCGTCTTCAACATGGTGTTTGAATGAACTCGTTGAAATAATGGAGTGTCACAAAAATGGACAAGTTGTTATTCCTGTGTTCTTCCAAATTGACCCTTCTCATGTTCGGAAGCAAACTAAAATTTATGCCACTGATTTAGCAAAACACAAGCAGCAAGGCATCAATGATCATAAGATACAAAATTGGAAGAATGCTCTTTCTCAAGCAGCTAATTTATCCGGCTTTCATTCTACCTCATACAGGACCGAATTTGACTTGATTGAAGACATTACCAAAGTTGTTTTAACAAAGTTAAACCACAATAACACAAATGAGTTTACATGTAATCTCATATTGGATGATAACTATTGGAGCATTCAGTCTTTAATAAAAAAAAGGGATTCAGCAGAAGTTCAAATCGTTGGACTTTGGGGCATGGGGGGCATAGGAAAGACAACACTTGCTGCTGCTATGTTTCACAAACTCTCTTTTCAATATGAAGGTAATTGCTTCTTAGAAAATGTGACAGAAGTATCATCAAGGCATGGAATCAACTATACACGCAACAAACTACTTTCCAAGTTACTAAAAGAAGATGTTGATATTGACACTCCCAAAGTAATACCATCCATGATTAATATAAGACTCAAACGCATGAAATCTTTCATTGTTCTAGATGACGTACATACTTCAGAACTTTTGCAGAACTTGATTGGAGTGGGACATGGTTGGCTAGGAGCTGGTAGCACCATCATTGTAACGACAAGGGATAAGCATGTGCTGATAAGTGGAGGAATTGACAAAATTCATCAAGTTAAGAAGATGAACCCTCAAAAATCCCTCCATCTTTTCTGCTTGAATGCTTTTGACAAAGTCTTACCTAAGGAGGGATATGTTGAGCTCTCACAAAGAGCAATTGATTATACCGATGGTAACCCTTTAGCTTTGAAAGTATTAGGATCACTTCTTTGTTGCAAAAGTGAAATAGAATGGAATTGTGCACTAGCCAAACTGAAGAAAATTCCCAATGCAGAAATTGATAGCATATTGAGATGGAGTTATAATGAATTGGATGATACAGATAAAAACATATTTCTGGACATCGCTTGCTTTTTCAAAGGAGATAAACGGGATAGGGTAACAAAAATATTAAATAAGTGTGATTTCTTTGCAGATATAGGAATAAGACATCTTTTAGACAAGGCTCTTATACGAGTTGACTTTGAAAATTGCATACAAATGCATGACTTGATACAAGAAATGGGAAAGCAAATTGTTCGTGAAGAATCTCTTAGAAATCCCGAGCAACGCAGTAGATTATGTGATTCCAAGGAAGTTTGTGACGTATTGAAAAATAATCGAGGAACTGAGATGGTTGAAGCCATATTTTTAGATGCTAATGAATATACAAATATGAATTTAAGCCCCAAAACATTTGAAAAGATGGTAAACCTAAGGTTACTTGCTATTCGAGACCCAACGAGATGTGTGAACCTTCCACATGGTCTTGACTACTTGCCAGAAAATTTGAGATATTTTATGTGGGATAGATATCCATTGAAGTCTCTGCCTCCAACCTTTTGTCCTAAAATGCTTGTGGAACTTTCCATGAATCAAAGCCATGCAGAAAAACTTTGGAATGGAGTAGTGAATTTGCCAAATTTAGAGAGACTTGACCTCGGATTCTGCAGCAAGTTGAGAGAGTGTCCAAATGTGTCAGGTTCCCCGAATCTAAAAGAAGTAAGACTTAAATATTGTACAAGCTTGCTTGAAATTGATTCATCAATTTTCCTTCTCCAAAAGCTTGAAAGATTATTCATGACCGGATGTACATCACTTACAAACCTTTCCAGTAACACTTGTTCTCCGGCCCTCCTTAAATTAATTGCGTCCGATTGTGGAAATCTTCAAGAATTCTCAGTCACATTTGCTTCCACTGATCGTTTGGCTTTGAACTTATCAAATTGGGGTGGGATTGAATTTCCATCATCGTTATTGAATATAAAAAATCTTGGCACCTTTTACTCTCCTTTGATTGAATGTCTTGCAAATCTTCCAGAAAACTTTGCCAATCATCTTTGGTTGAATAGGTCACCGAATTGTGAACATGACCCTTCCGTCACCTTACATAAATTAGTCTCTAGTCCTGCCTTCTTGAGTGTAAAAAAATTAACCTTAAATTATATTGATTTTCTGGTTGAAATCCCGGACAATATCTCCTTACTATCGTCATTAGAGTCTTTAACACTAATTGCAATTGACATTATAAGCTTGCCAGAGACCATTAAGCATCTTCCCCGACTTATGACACTTGGTGTTTACGAATGTGAAAGGCTTCAATCTATTCCGATGTTATCACAATTCATTCCATTTTTCATTGTCTGGAATTGTATATCTCTCGAGGAAGTATTGATTTCAATGGATGCACCAGATGTCAATCTCAATGGTTTTAGTATTATCCTTAACTGCGAAAATTTGGAACAACATTCAAACCATACAGTTCTGGAAAATGCTATTTTTGGGATTGAACGTCTAGCAAGACTAAATTTAGAAGATGAAGATCATATTAAGTACTTGTTACCTGGTATGCCAGACATAGAATATTGGTTCCATTACAGTTCCACACAAGTCTCTTTCACTCTTGAGCTTCCTCCTAATTTGTTGGGTTTCAGCTACTACTTGGTTCTTTCTCCAGGCCGTTTGGGATATCTTGTAGATTTTGGATGTGAGTGCTACTTGGACAATAGTTCAGGTGAAAGGATCTATATAACAAGTTTCGCAAGAGCCATCTTGTACGGATCACCCTTGTTTGATGATATTAAGAACTCGGTCCACTTGATGTCAGATCATATCGTTTTATGGTATGATCCAGAAAGTTGCAAGAAAATAATGGATGCAGTTGAAGCTATTAATGATGTGAATAGCACCTGTTACAATCCAAAACTTACATTTAGATTCTTTATTGATGAAAGTGAAATTCTATATGATAAAATGAGGATAAAAGAGTGTGGGTTTCGCTGGATATATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACATCTTTGGAACTCCTCCCAGCCTAGAATTAGATTCAAGAAAAGAATTGAGTGTGAGTTATTTGTGGGACTATGTTATTGAGCTTGACCCACCCCAAAGTTTAGTTCAGAACACAATTGCTTCCGAAATCCCGCATGCTGTTTCTGCGGTTAATTCTGGCCCTAAAGAAACGAGCGACATACAACTCTCAGAGAAATGGTGA 3504 0.3696 MASSSSSHSIVVKKYDIFISFRGDDTRVGFTSHLHAALKRSNLETYIDCRIEKGDQVWAELVKTIKDSSLFLVIFSENYASSTWCLNELVEIMECHKNGQVVIPVFFQIDPSHVRKQTKIYATDLAKHKQQGINDHKIQNWKNALSQAANLSGFHSTSYRTEFDLIEDITKVVLTKLNHNNTNEFTCNLILDDNYWSIQSLIKKRDSAEVQIVGLWGMGGIGKTTLAAAMFHKLSFQYEGNCFLENVTEVSSRHGINYTRNKLLSKLLKEDVDIDTPKVIPSMINIRLKRMKSFIVLDDVHTSELLQNLIGVGHGWLGAGSTIIVTTRDKHVLISGGIDKIHQVKKMNPQKSLHLFCLNAFDKVLPKEGYVELSQRAIDYTDGNPLALKVLGSLLCCKSEIEWNCALAKLKKIPNAEIDSILRWSYNELDDTDKNIFLDIACFFKGDKRDRVTKILNKCDFFADIGIRHLLDKALIRVDFENCIQMHDLIQEMGKQIVREESLRNPEQRSRLCDSKEVCDVLKNNRGTEMVEAIFLDANEYTNMNLSPKTFEKMVNLRLLAIRDPTRCVNLPHGLDYLPENLRYFMWDRYPLKSLPPTFCPKMLVELSMNQSHAEKLWNGVVNLPNLERLDLGFCSKLRECPNVSGSPNLKEVRLKYCTSLLEIDSSIFLLQKLERLFMTGCTSLTNLSSNTCSPALLKLIASDCGNLQEFSVTFASTDRLALNLSNWGGIEFPSSLLNIKNLGTFYSPLIECLANLPENFANHLWLNRSPNCEHDPSVTLHKLVSSPAFLSVKKLTLNYIDFLVEIPDNISLLSSLESLTLIAIDIISLPETIKHLPRLMTLGVYECERLQSIPMLSQFIPFFIVWNCISLEEVLISMDAPDVNLNGFSIILNCENLEQHSNHTVLENAIFGIERLARLNLEDEDHIKYLLPGMPDIEYWFHYSSTQVSFTLELPPNLLGFSYYLVLSPGRLGYLVDFGCECYLDNSSGERIYITSFARAILYGSPLFDDIKNSVHLMSDHIVLWYDPESCKKIMDAVEAINDVNSTCYNPKLTFRFFIDESEILYDKMRIKECGFRWIYQEEEEEEEEEEEEEEEEEEDIFGTPPSLELDSRKELSVSYLWDYVIELDPPQSLVQNTIASEIPHAVSAVNSGPKETSDIQLSEKW 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00598 1167 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 179 - -
Trre16g00598 1167 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Trre16g00598 1167 PRINTS Disease resistance protein signature 622 638 - -
Trre16g00598 1167 PRINTS Disease resistance protein signature 381 395 - -
Trre16g00598 1167 PRINTS Disease resistance protein signature 212 227 - -
Trre16g00598 1167 PRINTS Disease resistance protein signature 287 301 - -
Trre16g00598 1167 MobiDBLite consensus disorder prediction 1084 1105 - -
Trre16g00598 1167 Pfam NB-ARC domain 201 429 IPR002182 GO:0043531
Trre16g00598 1167 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 878 IPR044974 GO:0006952
Trre16g00598 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 440 IPR027417 -
Trre16g00598 1167 ProSiteProfiles TIR domain profile. 13 177 IPR000157 GO:0007165
Trre16g00598 1167 Pfam TIR domain 14 183 IPR000157 GO:0007165
Trre16g00598 1167 Coils Coil 1078 1102 - -
Trre16g00598 1167 MobiDBLite consensus disorder prediction 1084 1109 - -
Trre16g00598 1167 Gene3D - 182 338 IPR027417 -
Trre16g00598 1167 Gene3D Ribonuclease Inhibitor 499 720 IPR032675 -
Trre16g00598 1167 Gene3D Ribonuclease Inhibitor 721 939 IPR032675 -
Trre16g00598 1167 SUPERFAMILY L domain-like 485 900 - -
Trre16g00598 1167 SMART till_3 14 151 IPR000157 GO:0007165
Trre16g00598 1167 Gene3D - 347 430 IPR042197 -
Trre16g00598 1167 Gene3D - 11 181 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00598 Trre-Chr16 4466381 4470911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00598 13 823 WRKY Transcription Factor Family AT4G12020 31.541 5.11e-90 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00598 - - psat:127076382 1384.78