Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00580 ATGGAGGAAACTCCTACAATCCTCCATGGAACAATTGAAGCTACCATCTTCAATACCTCACCTTACACACCCTTTTTCCTCTTCAATTGCTTATGTACAAAAGGAAAACCTGCTTATGTAACCATAAAGATAGACAACAAAAAGGTTGCAAAAACAAGCAAAGAAAGAAACCGAATTTGGAACCAAACCTTTCATATTCAATGTGCTCATCCAACTAATTCAGTTATCACAATTACATTAAAAACATCAAATTCCATATTAGGAAAATATCATATCAAGGCCCAACAACTTTTAAATGAAGAAAGTTTAATCATCAATGGATTATTCCCTCTCCTCATGGAAAATGAAAAACCAAACCCAAAACTTAAATTGAAGTTTATATTATGGTTTAAGCCTGCAAAATTGGAACAAAGTTTGGCAAAGGTACTAAGCAATAGGGAATTTCAAGGGCTAAAGGATGCAAAATTTCCACTAAGGTCTAATTGTCAAGTCAAACTTTATCATGATGCTCATCATTGTCCTACCTTTCATCCTCCCTTTGATCCATGTGGTACTCCAAAAAATCTATGGGAGGATGTGTTTAAAGCCATTGAGGGTGCAAAGTATATAGTTTATATTGCAGCTTGGTTCCTCAATCCCATGATGGTTTTGGTAAGAGATCCTCATACAGAAATCCAACATGCAAGAGGAATGAGTTTAGGTGAACTATTGAATAAGAAGGCAGATGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCATTGCCCTTAATTAAGAACAAATTAGGTGCAATGAACATACATGATGAGGATGCTCTTACATATTTCAACCAAACAAAAGTAATATGCAAAAAATGTCCCAGATTACACCATAAGTTCCCAACACTATTTTCTCATCATCAAAAAACTATAACAGTTGACACCAAAGTGCTTAATTCTGATAATGATAGACAAATTATGAGCTTTGTTGGTGGATTAGATTTGTGTAATGGTAGATATGATACTGAACAACATTCATTGTTTCAAACACTCATTAAGGAATCACATTGTTATGATTTTTATCAACCAAACATTATAGGAGCTAACCTTAACAAAGGAGGACCAAGAATTCCTTGGCATGATTCTCATGCTTGTGTTATTGGTGAAGCTGCTTTGGATATGTTAGCAAATTTTGAGCAAAGATGGACAAAACAATGTGATCCTTCTCTTCTGGTTCCTTCTAGCACCTTGGTGAATCTTGTTCCTGAAGCAAACTCAAACACTTCAATAGAAAATAATTGGAAAGTTCAAGTTTATAGATCAATTGATCATGCTTCTGTTGATGATTTGTGTGGAACTTTCAATGTGGAGAGAAGCATTCAAGAAGCTTATGTTGAAGCAATTAGGCATGCTGAGAAGTTTATATACATTGAAAACCAATACTTTATTGGAGGATGTCAATGGTGGGAAAAAGATAACCATGTTGGTTGCACAAATTTGATTCCTATTGAAATTGCACTAAAAGTTGTAAGTAAGATCAAAGCAAAAGAGAGATTTGCAGTGTATATAGTTATACCAATGTGGCCAGAAGGAGTGGCTGAAAGTGAATCTGTTCAAGATATATTGCATTGGACAAGAGAAACTGTGGCAATGATGTATAGGTTGATTGGTGAAGCAATAAAAGAAAGTGGTGAAATAGGGCATCCAAGAGATTATTTGAATTTCTTTTGTCTTGCAAATAGAGAGCATAAGGGAAAAGGAGAATATCTTCCTTTAGATTCTCCTCATCCTCAAACAGATTATTGGAATGCACAGAAAAATAGAAGATTCATGGTTTATGTTCATTCCAAGCTCATGATAGTGGATGACATGTACATATTAATAGGTTCAGCTAACATAAACCAAAGATCAATGGATGGGAAAAGGGACACAGAGATTGCAATAGGATGCTTCCAAATTCAAGATGAAGTTGAGAAACAAATGAACCTTAGTGATGTTCATGCATACAGAATGTCACTATGGTATGAGCACACAAATAGTTTCAATGAATTGTTCTTAGAGCCACAAAATTTGGAATGTGTGAAAATGATGTGTTCAATTGGTGATCAAATGTGGGAAATCTATAGCAATGAAGAAATTGTTGACATGGAAGGTGTGCACCTTGTTAGTTACCCTATGAAGGTTACACAAGAAGGGTATGTGAAAGATTTGAGCAATGGAGTTTATTTTCCTGATACAATTTCTCTAGTGAAGGGGAAGAGATCTACATTGTTGCCCCCTAACTTGACTACTTAG 2283 0.353 MEETPTILHGTIEATIFNTSPYTPFFLFNCLCTKGKPAYVTIKIDNKKVAKTSKERNRIWNQTFHIQCAHPTNSVITITLKTSNSILGKYHIKAQQLLNEESLIINGLFPLLMENEKPNPKLKLKFILWFKPAKLEQSLAKVLSNREFQGLKDAKFPLRSNCQVKLYHDAHHCPTFHPPFDPCGTPKNLWEDVFKAIEGAKYIVYIAAWFLNPMMVLVRDPHTEIQHARGMSLGELLNKKADEGVAVRVMLWDDETSLPLIKNKLGAMNIHDEDALTYFNQTKVICKKCPRLHHKFPTLFSHHQKTITVDTKVLNSDNDRQIMSFVGGLDLCNGRYDTEQHSLFQTLIKESHCYDFYQPNIIGANLNKGGPRIPWHDSHACVIGEAALDMLANFEQRWTKQCDPSLLVPSSTLVNLVPEANSNTSIENNWKVQVYRSIDHASVDDLCGTFNVERSIQEAYVEAIRHAEKFIYIENQYFIGGCQWWEKDNHVGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGVAESESVQDILHWTRETVAMMYRLIGEAIKESGEIGHPRDYLNFFCLANREHKGKGEYLPLDSPHPQTDYWNAQKNRRFMVYVHSKLMIVDDMYILIGSANINQRSMDGKRDTEIAIGCFQIQDEVEKQMNLSDVHAYRMSLWYEHTNSFNELFLEPQNLECVKMMCSIGDQMWEIYSNEEIVDMEGVHLVSYPMKVTQEGYVKDLSNGVYFPDTISLVKGKRSTLLPPNLTT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00580 760 Gene3D Endonuclease Chain A 170 432 - -
Trre16g00580 760 Gene3D C2 domain 33 131 IPR035892 -
Trre16g00580 760 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 34 126 IPR035892 -
Trre16g00580 760 Gene3D Endonuclease Chain A 447 661 - -
Trre16g00580 760 PIRSF PLD_plant 29 760 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre16g00580 760 Pfam Phospholipase D C terminal 679 749 IPR024632 -
Trre16g00580 760 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824
Trre16g00580 760 Pfam C2 domain 38 101 IPR000008 -
Trre16g00580 760 PANTHER PHOSPHOLIPASE D 36 742 IPR015679 -
Trre16g00580 760 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Trre16g00580 760 Pfam Phospholipase D Active site motif 299 335 IPR001736 GO:0003824
Trre16g00580 760 SUPERFAMILY Phospholipase D/nuclease 429 688 - -
Trre16g00580 760 SMART pld_4 606 633 IPR001736 GO:0003824
Trre16g00580 760 SMART pld_4 298 335 IPR001736 GO:0003824
Trre16g00580 760 Pfam PLD-like domain 608 657 IPR025202 -
Trre16g00580 760 SUPERFAMILY Phospholipase D/nuclease 154 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00580 Trre-Chr16 4306045 4310171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00580 25 760 Phospholipase D Gene Family (Wang group) AT1G55180 60.188 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00580 K01115 - gmx:100812642 1234.94