Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00575 ATGAGTCGAGAGGTGCAGAAGAGGGGGAAACAAGAGAAAGGTTGTGATGTTGCTATGAAGGTTATTGTTGCTGTTAAGGCATCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCATTAACTCATGTTGTTCAACCTGGTGATTGCATTACACTTCTAGTGGTTGTTCCTTCACAAACTTCAGGTAGAAAATGGGGGTTTCCTAGATTTGCTGGTGATTGTGCCAATGGTATGAAGAAGTGTCCCCCAGGAACAATTTTAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATTCTTCAACTCCATGATGTCTATGATCCAAATAAGATAAATGTCAGAATTAAAATTGTTTCCGGATCACCGTGTGGATCAGTTGCTGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTATTAGACAAACATCTCAAACCTGAGGAAAAGAAATGCATGGAAGAGCTGCAGTGTAACATTGTTGTTATGAAGCGTGCTCAACCGAAAGTGCTTCGCTTGAACTTGATTGGACCACAAAAGAAGGAAGTTGAAGAAGCAGGTACATCACCTTCCGTGCAAGACGATATGCTTGAAAAGCATACCAAAAACACGATTGATTCTTTAGTAGATTCTATCAAAGGACCAAATGTTACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTGTTACTACTGAAGCCGGTACCTCATCAGCTTCAAGCTCTGATCCCGGAACTTCACCGTTCTTTATATCTGAGATGAATAGTGAGTCAAAGAAAGAGGAAACCATTAAGGAAAGTCAAGAACTTTGTGATACTAATTCAGACACAGAAAGTGAAAGTCTTTCCACATCTTCGGCTAGCTTTAGATACCAACCATGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAATGAAGAAAAATCAGAGACATATCATGGTATGCCTCAAGCAACTACAACCAAAGCTTTGCTGGAAAAGTATTCTAGGCTTGATAGAGGAGCTGGAATTGAAATGTCGGCAGCATATAGAAATGACGCGGATTTTAGTGGTAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCAATATGTCAACACAAGGCACCTGTGTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCCACCGGTGGATTTTCACAAGCTAACTTCTTGGCGGAAGGAGGGTTCGGGTCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAACAACATAAATTGGCTAGTTCTCAAGGTGATGTGGAGTTTTGCTCCGAGGTAGAAGTCTTGAGTTGCGCTCAGCACCGAAATGTTGTTATGCTTATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAACGGATCATTGGATTCACATTTATATGGGCGACAAAGGGATCCATTAGAATGGTCTGCGCGACAGAAAATTGCTGTTGGAGCTGCTCGTGGATTAAGGTATCTTCATGAAGAGTGCAGAGTTGGTTGTATCATCCACCGTGATATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTTGTTACTGGTAGAAAAGCTGTTGATCTCACTAGGCCCAAGGGACAACAGTGCCTTGCTGAGTGGGCACGACCACTGTTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGGTTGGGAGGTCACTATTTAGAACATGAAGTCTATTGCATGCTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTCTAGACCTCGCATGTCACAGGTTCTCCGGATTCTAGAGGGTGACATGGTGGTGGACACAAATTACAATTCGACTCCAGGCTATGATGTTGGAAACAGGAGCGGTCGCATTTGGTCTGAGCCACTACAGAGGCAGCACCAATACAGTGGTCCCCTCTTAGAAGATTCATTGGAGTCATCATTCAGTGGAAAGCTATCTATTGACAAGTACAAGCCTGCTTCTTATTGGGATAGGAGTAATAGGGACAAGCCAAGAAAAGCATCATGTGAAGATGATATTTGA 2274 0.4314 MSREVQKRGKQEKGCDVAMKVIVAVKASSKEIPKTALVWSLTHVVQPGDCITLLVVVPSQTSGRKWGFPRFAGDCANGMKKCPPGTILEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGSVAAEAKKGQASWVVLDKHLKPEEKKCMEELQCNIVVMKRAQPKVLRLNLIGPQKKEVEEAGTSPSVQDDMLEKHTKNTIDSLVDSIKGPNVTPTSSPELGTPFTVTTEAGTSSASSSDPGTSPFFISEMNSESKKEETIKESQELCDTNSDTESESLSTSSASFRYQPWITELLLHQQSSQRNEEKSETYHGMPQATTTKALLEKYSRLDRGAGIEMSAAYRNDADFSGNLREAIALSGNAPLGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLAEWARPLLEEYAIDELIDPRLGGHYLEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVVDTNYNSTPGYDVGNRSGRIWSEPLQRQHQYSGPLLEDSLESSFSGKLSIDKYKPASYWDRSNRDKPRKASCEDDI 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00575 757 CDD STKc_IRAK 412 678 - -
Trre16g00575 757 Pfam Protein tyrosine and serine/threonine kinase 410 675 IPR001245 GO:0004672|GO:0006468
Trre16g00575 757 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 482 685 - -
Trre16g00575 757 Gene3D Transferase(Phosphotransferase) domain 1 482 689 - -
Trre16g00575 757 SUPERFAMILY Protein kinase-like (PK-like) 390 682 IPR011009 -
Trre16g00575 757 MobiDBLite consensus disorder prediction 209 257 - -
Trre16g00575 757 MobiDBLite consensus disorder prediction 258 275 - -
Trre16g00575 757 MobiDBLite consensus disorder prediction 209 287 - -
Trre16g00575 757 PANTHER OS01G0750732 PROTEIN 240 684 - -
Trre16g00575 757 FunFam Dual-specific kinase DSK1-like 12 166 - -
Trre16g00575 757 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 378 481 - -
Trre16g00575 757 ProSitePatterns Tyrosine protein kinases specific active-site signature. 527 539 IPR008266 GO:0004672|GO:0006468
Trre16g00575 757 ProSiteProfiles Protein kinase domain profile. 406 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00575 757 Gene3D Phosphorylase Kinase; domain 1 378 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00575 Trre-Chr16 4271655 4276132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00575 345 672 Trihelix Transcription Factor Family AT1G68690 50.000 5.98e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre16g00575 PK_Tyr_Ser-Thr 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00575 - - cam:101503019 1362.44