Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00572 ATGGCTTACTTGGAGAATATAATAGGTGATTTCTCATTGATTTGTCTCAAGGATTTTGATTTCACATCTTTATGTTCTCTAAGGAGCACAATAGACACTATCAATGTACTTTTTGTCTGTGTCTACTACACGTCTTTGGTAATCGGATTAATCAGAAAAACTTCTGCACGTAGGAGCCAAACAAGAAGTTGCATTTTCCAACTTGTCTCAATCTGTTGTGCTCATATTAGCATTGTTTTTTTGCTATTGGCTTGTGGAATCTCATATACAGAACTGAGAGTCAAATGGATTAAAATACTAAACTCAATCTGGTGGGCATCTTCCTGTGTATTGGTTTCAACTCTCAACATTGAAATTCTGTTAAAAGATCATGCCATTGAAACTTTTGATATTGTACAGTGGCTTGTGCATTTCCTTCTTCTATACTGTTCCTTCAAAAATCTTGGTTACTTGGGAACTCATAGTGTCCAAGAATGTATGTCTGAGCCACTATTAGCTCAAAATAATGAAACTAAACAAACAGGACTAGGCCATGCTACCTTTCCCAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGCTCTTGAAGACATACCTTCCCTTGTTTGTGAAGATAAAGCAGGCAGTGCTTATCAAAGCTTTGTGCATGCATGGGAATCCCTTGTAAGGGAGAAGACTAATAACAATACAAAGAACTTGGTTCTTTGGTCTCTAGTTAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCATTACTCAGAACTATTTCTGTTGCAGTTTCACCTCTAATACTCTACGCTTTTGTTAACTACTCAAATAGAACTGAGGTAGATCTCAAACAAGGTTTTTCCATAGTTGGTTTTCTGATTCTCACTAAATTAGTTGAGTCTTTATCTCAACGACATTGGTTCTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATCAAAAACAGCTAAAGCTTTCAAACTCAGCAAGAGAAAGACATTCAACTGGCGAAATTGTGAATTATATTGCAATTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAACTTGTTTTGTCAATTGCTATTCTTTTTGGTGTAGTTGGTATTGGTGCTCTTCCTGGTTTAGTACCTCTAGCAATATGTGGACTTCTCAATGTACCACTTGCAAGGATCCTACAAAATTGTCAGCTACAGTTTATGATTGCACAGGATGAACGTCTTAGATCAACTTCAGAGATTCTAAATAGTATGAAAATCATTAAGTTACAATCTTGGGAAGAAAAATTTAAGAACGTTGTTGAGTCCCTACGAGATAAAGAATTCAAATGGTTGTCTAAGATACAGAACCTGAAAGCTTTTGGAACATTTCTTTATTGGCTGTCTCCTACAGTTATTCCTGCTGTTGTCTTCCTTGGATGCGCTTATTTCAATAGTGCACCATTGAATGCTGAAACCATTTTTACAGTTCTTACAACATTGAGGAACATGGGAGATCCTGTTCTTATGATCCCAGAGGCCCTATCTGTTATGATTCAGGTTAAGGTTTCCTTTGATCGCCTCAACACATTTATGCTCGCTGAAGAGCTAAGTAATGATGATAACGGAGGAAAAATAAAGCAATGTTCAGTCAATGCTATGGCAATTCAAGCTGGCAACTTCATTTGGGATCATGAATCTGTGTCCCCCACTTTAAAAGATGTGAATTTAGAGATAAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCCGGAAAATCATCTCTTCTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTTATGTAGGTAGCACACTAGCATATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAAGAAGATATGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAATGATTTTAGACATGGTGATCTTACCGAAATTGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTCGATGACCCTTTCAGTGCCGTTGATGCGCACACTGCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCGTTCTTGTGACGCATCAAGTGGAGTTTCTTTCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGTACTTATGAAAATCTCCTGACAGCTGGGACAGCCTTTGAACAACTCGTGAACGCCCATAAAGATGCAGTTACCGAGCTAAATCAAGATAATGAAAAGAAAAGAGATTCTGAAAATGATGTTTATGCTAATCCACGAGACTCTCATTCTTTATATCTCACTAAAAATCAGAGCGAGGGGGAGATTTCTACCAAGGATCAACTTCAGGATGTCATACATGCTGTGTTTTATCTTGTTAGCACAATCAACTTTTATGGCTTTGCAGACTGCATCATCCTTTTGGCTTGCTATTGCCATCGAAATTCCAAAACTTCTACTGCCTTCTTCTCAAGCTTCACTACATCTATCTTTAATTCCCCTATGATGTTCTTTGATTCAACCCCTATAGGAAGGATTTTAACCAGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATTCCTCATTCCATCCTCTTTGCATTATCTGTAGCAATTGAAATACTCGTAATAATTTGCATAATGGTTTCAGTCACATGGCACGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCAACTGCAAGGGAACTAATGCGGATCAATGGAACCACTAAAGCTCCAGTGATGAATTTTTCATCTGAGACATCACATGGAGTGGTTACTTTAAGAGCATTCAACATGGCAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATGTGGCAATGGAATGGGTAATTCTAAGGGTTGAAGCAATTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTGTTCTACTTCCTCGTGGATACGTGTCCCCAGGACTTGTGGGACTGTCTCTTTATTATGCTTTTATTTTGACAACAGCCCAAATATTTTGGACTCGATGGTTTTCCAACTTATCAAACCATGTTATCTCTGTTGAAAGAATCACTCAATTCATTCACATTCCAGCCGAGCCTCCTGCCATTGTGGAGGATAACCGACCGCCGTCTTCATGGCCTTCCAAGGGTAGGATTGATGTTCAAGGCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACCTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGATATTCTCATAGATGGGATAAACATATGCTCAATCGGGTTGAAGGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGTAACATTAGGACAAACTTGGACCCTCTTGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTAAAGGAAACCATCAGTAGGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAACTGTTTTGTCTAGGAAGGGTACTACTTAAGAGGAACAGAATTCTAGTTCTGGATGAAGCAACAGCATCCATTGATTCTGCCACAGATGCCATTCTACAAAGAATAATTAGACAAGAATTTGCAGAATGCACGGTTATATCCGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCGTATGGGAAACTGGTGGAATATGATGAGCCTTCAAAGCTAATTAACACTAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTGTAGCAAGAATTCCTTCACAAACATAAGCAAACAGCAACTATGTCTATGA 4152 0.3846 MAYLENIIGDFSLICLKDFDFTSLCSLRSTIDTINVLFVCVYYTSLVIGLIRKTSARRSQTRSCIFQLVSICCAHISIVFLLLACGISYTELRVKWIKILNSIWWASSCVLVSTLNIEILLKDHAIETFDIVQWLVHFLLLYCSFKNLGYLGTHSVQECMSEPLLAQNNETKQTGLGHATFPSKLIFSWVNSLLSLGYSKPLALEDIPSLVCEDKAGSAYQSFVHAWESLVREKTNNNTKNLVLWSLVRTYLKENILIAFYALLRTISVAVSPLILYAFVNYSNRTEVDLKQGFSIVGFLILTKLVESLSQRHWFFNSRRSGMKMRSALMVAVYQKQLKLSNSARERHSTGEIVNYIAIDAYRMGEFPWWFHITWTCALQLVLSIAILFGVVGIGALPGLVPLAICGLLNVPLARILQNCQLQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNVVESLRDKEFKWLSKIQNLKAFGTFLYWLSPTVIPAVVFLGCAYFNSAPLNAETIFTVLTTLRNMGDPVLMIPEALSVMIQVKVSFDRLNTFMLAEELSNDDNGGKIKQCSVNAMAIQAGNFIWDHESVSPTLKDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVYVGSTLAYVSQSSWIQSGTVQDNILFGKPMDKRRYEKAIKACALDKDINDFRHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVVLVTHQVEFLSEVDTILVMEDGKVIQSGTYENLLTAGTAFEQLVNAHKDAVTELNQDNEKKRDSENDVYANPRDSHSLYLTKNQSEGEISTKDQLQDVIHAVFYLVSTINFYGFADCIILLACYCHRNSKTSTAFFSSFTTSIFNSPMMFFDSTPIGRILTRASSDLSILDFDIPHSILFALSVAIEILVIICIMVSVTWHVLIVAVPAMVASIFIQQYYQATARELMRINGTTKAPVMNFSSETSHGVVTLRAFNMADRFFKNYLKLVDTDASLFFHSNVAMEWVILRVEAIQNLTVITAALLLVLLPRGYVSPGLVGLSLYYAFILTTAQIFWTRWFSNLSNHVISVERITQFIHIPAEPPAIVEDNRPPSSWPSKGRIDVQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSTGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGNIRTNLDPLGLYSDDEIWKALEKCHLKETISRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFAECTVISVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLINTNSSFSKLVAEYWSSCSKNSFTNISKQQLCL 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00572 1383 CDD ABC_6TM_ABCC_D2 846 1104 IPR044726 GO:0140359
Trre16g00572 1383 Gene3D - 1112 1363 IPR027417 -
Trre16g00572 1383 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524|GO:0016887
Trre16g00572 1383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 573 794 IPR003439 GO:0005524
Trre16g00572 1383 Pfam ABC transporter 1146 1294 IPR003439 GO:0005524
Trre16g00572 1383 CDD ABCC_MRP_domain2 1127 1347 - -
Trre16g00572 1383 FunFam ABC transporter C family member 3 1112 1363 - -
Trre16g00572 1383 Gene3D ABC transporter type 1, transmembrane domain 835 1110 IPR036640 GO:0005524|GO:0016020
Trre16g00572 1383 FunFam ABC transporter C family member 10 239 553 - -
Trre16g00572 1383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1131 1363 IPR003439 GO:0005524
Trre16g00572 1383 Pfam ABC transporter transmembrane region 847 1078 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00572 1383 Pfam ABC transporter transmembrane region 258 516 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00572 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1119 1362 IPR027417 -
Trre16g00572 1383 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 178 1365 - -
Trre16g00572 1383 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 256 537 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00572 1383 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 890 1079 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00572 1383 SMART AAA_5 1155 1347 IPR003593 GO:0016887
Trre16g00572 1383 SMART AAA_5 598 771 IPR003593 GO:0016887
Trre16g00572 1383 Pfam ABC transporter 589 723 IPR003439 GO:0005524
Trre16g00572 1383 CDD ABCC_MRP_domain1 571 771 - -
Trre16g00572 1383 Gene3D - 546 819 IPR027417 -
Trre16g00572 1383 Gene3D ABC transporter type 1, transmembrane domain 243 545 IPR036640 GO:0005524|GO:0016020
Trre16g00572 1383 FunFam Multidrug resistance protein associated1 550 814 - -
Trre16g00572 1383 CDD ABC_6TM_ABCC_D1 257 545 IPR044746 GO:0140359
Trre16g00572 1383 SUPERFAMILY ABC transporter transmembrane region 876 1111 IPR036640 GO:0005524|GO:0016020
Trre16g00572 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 794 IPR027417 -
Trre16g00572 1383 SUPERFAMILY ABC transporter transmembrane region 244 545 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00572 Trre-Chr16 4236894 4242817 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00572 587 853 Calmodulin-binding Proteins AT2G36910 26.552 2.00e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00572 - - gmx:100784827 1987.62