Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00567 ATGTGCTGTAGTGTCATTAGCATTGCATTTTTCAGTATTGGACTGTCCAATCTCATAGCTAAAACTGATAATTCTAACAAACTGAGTTGCATTATCAGAGGATTCATTTGGATTTCTTTAACAGTTTCTCTGCTTGTTCAAAGAATCAAATGGATTAGAATATTAAACTCTATATGGTGGCTATCTTCTTGTGTATTGGTTTCAGCTCTCAACATTCACATTCTGTTCAAAGATTATGATGCCATTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTTCTATTATGTGCCCTAAAAATTTTTGGTTATTTAGGAAATCATAGTGTTCAAGAATGTTTATCTGAGCCACTATTAGCCCAAAAAATTGAAACTAAAGAAACAGGATTAGATCATGCTACTTTTCTTAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCATTTTAGGTTACTCAAAGCCACTAGATCTTGAAGATATACCTTCCCTTGTTTCTGAAGATGAAGCAAACACGACCTATAAAAAATTTGTTTATGCTTGGGAGTCGCTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCATTACTCAGAACTATTTCTGTTGCAGTTTCTCCTCTAATTCTCTATGCTTTTGTTAACTACTCACATAGAACTAAGATAGATCTCAAAGAAGGTCTTTCTATAGTTGGTATTTTGATTCTCACCAAGTTGTTTGAGTCTTTTTCTCAAAGACATTGGTTTTTTAATTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTTTGATGGCAGCAGTTTATCGAAAACAGCTAAAGCTTTCTAGCTCAGCGAGGACAAGACACTCTGCCGGTGAAATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGTCTTCTGCATTGCAACTTGTTCTTTCCACTGTTATCCTTTTTGGTGTTGTAGGTATTGGTGCTCTTCCTGGCTTAGTGCCTCTTCTTATATGCGGACTTCTCAATGTACCATTTGCAAGGATCCTACAAAATTGCCAGTCACACTTTATGATTGCACAGGACACACGTCTTCGGTCAACTTCAGAGATTCTGAATAGTATGAAGATCATTAAGTTACAGTCATGGGAAGAAAAATTCAAGAGCTTAGTTGAGTCTTTTCGCAATAGAGAGTTTGTATGGTTGTCTAAGGCGCAAATCTTAAAAGCTTTTGGATCATTTCTTTATTGGATGTCTCCTACTGTTATATCTTCTGTAGTTTTTGTTGGATGTATTGTTTCAAAGAGTGCAACTTTAAATGCTGAAACCATTTTTACAATTCTGGTAACATTGAGGAACATGGCAGAACCTGTTAGGATGATCCCTGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCGTTTGACCGTCTTAGTAACTTTCTTCTTGATGAAGAACTAAACAATGATGATAGTGATAGAAGCTTAAGGCAATGTCCAGTTGATGCTGTGGAAATTCAAGATGGAAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAACACATGTGAATTTAGAAATCAAACAGGGACAGAAAGTAGCAGTTTGTGGACCTGTTGGAGCCGGAAAATCATCACTTTTGTATGCAATACTCGGAGAGATTCTTAAAATTTCAGGAACTGTTAATGTAGGTGGCACACTCGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGCGCCTTAGATATGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAACATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATGACTGTGTCATGACTTCCTTAAGAGAGAAAACAGTCGTTCTAGTTACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATATTGGTAATGGAAGGTGGAAAACTTATTCAATCAGGTAATTATGAGAATCTCCTGACAGCTGGAACAGCCTTTGAACTACTCATGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAGATAGTGAAAATAAAATAGGTTCTGAAAATGAGGTTTTGTCTAATCCTCAAGACTCTCATGGTTTTTATCTCACTAAAAATCAAAGCGAGGGAGAAATTTCTAGTATCAAGGGTCCAACTGGTGCACAACTTACACAACAGGAAGAAAAAGTGATTGGTGATGTTGGATGGAAGTCATTCTGGAATTATATTAATTATTCCAAAGGGTCATTCATGTTGTTTTTTATCGTGTTAGCACAATCTGTTTTTTTGTCTTTACAGACTTCGTCAACCTATTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACGAATGTCACCTTGATTGGAGTTTATGCATTAATTTCTTTTTCTAGTGCTGCTTTTATATATGTAAGAACTTACTTAACTGCGCTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCGAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCGGATTTGTGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCTATAACACTTGAAATTGTAGTGGTTACTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGCTCCTGCAATGGTTGCATCAATACTCATTCAGAATTATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGGACAACTAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACATGGAGTGGTTACTGTAAGAGCATTCAACATGTTAGACAGATTTTTCGAAAACTACTTAAAACTTGTGGATATGGACGCTTCACTGTTCTTTCATTCAAATGTGGCAATGGAATGGGTAATTCTAAGAGTTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTTCCTCAGGGATATGTATCCCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAGTATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATCTCAGTTGAAAGAATCAATCAATTCATTCACATACCAGCTGAGCCTCCTGCGATTGTCGATAATAACCAACCTCCATCTTCATGGCCTTCCAAGGGCATGATTGATCTTCAAGGCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTCATGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGTAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGACATTCTCATAGATGGGATTAATATATGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCACAAGAACCAACACTTTTCAAGGGAAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCGGATGATGAAATATGGAAGGTTGTAGAGAAATGTCAGCTTAAGGAAACAATTGATAAGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGAGAAAGGCAATTGATTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATGTGATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACAGAATTCCAACTGTAATAGACAGTGACATGGTGATGGTCTTATCTTATGGGAAACTTGTCGAATATGACGAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGAAAGAATTCCTTCACAAACATAAGCAAACAGCAACTATGA 4200 0.3719 MCCSVISIAFFSIGLSNLIAKTDNSNKLSCIIRGFIWISLTVSLLVQRIKWIRILNSIWWLSSCVLVSALNIHILFKDYDAIETFDIIIWLVHFLLLLCALKIFGYLGNHSVQECLSEPLLAQKIETKETGLDHATFLSKLIFSWVNSLLILGYSKPLDLEDIPSLVSEDEANTTYKKFVYAWESLVRERTKNNTKSLVLWSIVRTYLKENILIAFYALLRTISVAVSPLILYAFVNYSHRTKIDLKEGLSIVGILILTKLFESFSQRHWFFNSRRSGMKMRSALMAAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWSSALQLVLSTVILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSHFMIAQDTRLRSTSEILNSMKIIKLQSWEEKFKSLVESFRNREFVWLSKAQILKAFGSFLYWMSPTVISSVVFVGCIVSKSATLNAETIFTILVTLRNMAEPVRMIPEALSIMIQVKVSFDRLSNFLLDEELNNDDSDRSLRQCPVDAVEIQDGNFIWDHESVSPTLTHVNLEIKQGQKVAVCGPVGAGKSSLLYAILGEILKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDMDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTSLREKTVVLVTHQVEFLSEVDTILVMEGGKLIQSGNYENLLTAGTAFELLMSAHKDTITDLNQDSENKIGSENEVLSNPQDSHGFYLTKNQSEGEISSIKGPTGAQLTQQEEKVIGDVGWKSFWNYINYSKGSFMLFFIVLAQSVFLSLQTSSTYWLAIAIEIPKVTNVTLIGVYALISFSSAAFIYVRTYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLCILDFDIPYSITFVASITLEIVVVTCIMVSVTWQVLIVAAPAMVASILIQNYYQATARELIRINGTTKAPVMNFAAETSHGVVTVRAFNMLDRFFENYLKLVDMDASLFFHSNVAMEWVILRVEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQVFWTRWFSNLSNYIISVERINQFIHIPAEPPAIVDNNQPPSSWPSKGMIDLQGLEIRYRPNAPLVLKGITCTFHEGSRVGVVGRTGSGKSTLISALFRLVEPSTGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKVVEKCQLKETIDKLPSLLDSSVSDEGGNWSLGERQLICLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDEPSKLMNTNSSFSKLVAEYWSSCRKNSFTNISKQQL 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00567 1399 CDD ABCC_MRP_domain2 1145 1365 - -
Trre16g00567 1399 ProSitePatterns ABC transporters family signature. 652 666 IPR017871 GO:0005524|GO:0016887
Trre16g00567 1399 Gene3D ABC transporter type 1, transmembrane domain 187 509 IPR036640 GO:0005524|GO:0016020
Trre16g00567 1399 Gene3D ABC transporter type 1, transmembrane domain 797 1128 IPR036640 GO:0005524|GO:0016020
Trre16g00567 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 212 493 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00567 1399 Gene3D - 1130 1381 IPR027417 -
Trre16g00567 1399 CDD ABCC_MRP_domain1 527 727 - -
Trre16g00567 1399 FunFam Multidrug resistance protein associated1 506 770 - -
Trre16g00567 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1136 1380 IPR027417 -
Trre16g00567 1399 SUPERFAMILY ABC transporter transmembrane region 200 507 IPR036640 GO:0005524|GO:0016020
Trre16g00567 1399 SMART AAA_5 554 727 IPR003593 GO:0016887
Trre16g00567 1399 SMART AAA_5 1173 1358 IPR003593 GO:0016887
Trre16g00567 1399 Gene3D - 534 776 IPR027417 -
Trre16g00567 1399 SUPERFAMILY ABC transporter transmembrane region 820 1129 IPR036640 GO:0005524|GO:0016020
Trre16g00567 1399 CDD ABC_6TM_ABCC_D1 213 501 IPR044746 GO:0140359
Trre16g00567 1399 FunFam ABC transporter C family member 5 797 1128 - -
Trre16g00567 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 834 1097 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00567 1399 FunFam ABC transporter C family member 10 195 509 - -
Trre16g00567 1399 FunFam ABC transporter C family member 3 1130 1381 - -
Trre16g00567 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 748 IPR027417 -
Trre16g00567 1399 Pfam ABC transporter 1164 1312 IPR003439 GO:0005524
Trre16g00567 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1149 1381 IPR003439 GO:0005524
Trre16g00567 1399 Pfam ABC transporter transmembrane region 247 472 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00567 1399 Pfam ABC transporter transmembrane region 833 1097 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00567 1399 CDD ABC_6TM_ABCC_D2 829 1122 IPR044726 GO:0140359
Trre16g00567 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 527 750 IPR003439 GO:0005524
Trre16g00567 1399 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 133 1383 - -
Trre16g00567 1399 Pfam ABC transporter 545 679 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00567 Trre-Chr16 4182096 4188623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00567 527 792 Calmodulin-binding Proteins AT2G36910 25.175 2.18e-20 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00567 - - gmx:100784827 2155.18