Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00566 ATGTCTTACTTTGGGAACACAATAGGTGATATTTCGTGGATTTGTCTGAAGAATTCTGATTTCAATTCTTTATGCTCTCAGAAGAGTTTAATAGACACTATCAATATACTCTTTGTATGTGTCTATTACACATCTTTGATTATCACTTTAATCAGAAAAAGTTCTACAAATGAAAGCCATAAAAAAAGCTGGATTTTCCTTATTGCCTCAATGTGCTGTAGTGTCATTAGCATTGCATTTTTCAGTATTGGACTGTCCAATCTCATAGCTAAAACTGATAATTCTAACAAACTGAGTTGCATTATCAGAGGATTCATTTGGATTTCTTTAACAGTTTCTCTGCTTGTTCAAAGAATCAAATGGATTAGAATATTAAACTCTATATGGTGGCTATCTTCTTGTGTATTGGTTTCAGCTCTCAACATTCACATTCTGTTCAAAGATTATGATGCCATTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTTCTATTATGTGCCCTAAAAATTTTTGGTTATTTAGGAAATCATAGTGTTCAAGAATGTTTATCTGAGCCACTATTAGCCCAAAAAATTGAAACTAAAGAAACAGGATTAGATCATGCTACTTTTCTTAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCATTTTAGGTTACTCAAAGCCACTAGATCTTGAAGATATACCTTCCCTTGTTTCTGAAGATGAAGCAAACACGACCTATAAAAAATTTGTTTATGCTTGGGAGTCGCTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCATTACTCAGAACTATTTCTGTTGCAGTTTCTCCTCTAATTCTCTATGCTTTTGTTAACTACTCACATAGAACTAAGATAGATCTCAAAGAAGGTCTTTCTATAGTTGGTATTTTGATTCTCACCAAGTTGTTTGAGTCTTTTTCTCAAAGACATTGGTTTTTTAATTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTTTGATGGCAGCAGTTTATCGAAAACAGCTAAAGCTTTCTAGCTCAGCGAGGACAAGACACTCTGCCGGTGAAATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGTCTTCTGCATTGCAACTTGTTCTTTCCACTGTTATCCTTTTTGGTGTTGTAGGTATTGGTGCTCTTCCTGGCTTAGTGCCTCTTCTTATATGCGGACTTCTCAATGTACCATTTGCAAGGATCCTACAAAATTGCCAGTCACACTTTATGATTGCACAGGACACACGTCTTCGGTCAACTTCAGAGATTCTGAATAGTATGAAGATCATTAAGTTACAGTCATGGGAAGAAAAATTCAAGAGCTTAGTTGAGTCTTTTCGCAATAGAGAGTTTGTATGGTTGTCTAAGGCGCAAATCTTAAAAGCTTTTGGATCATTTCTTTATTGGATGTCTCCTACTGTTATATCTTCTGTAGTTTTTGTTGGATGTATTGTTTCAAAGAGTGCAACTTTAAATGCTGAAACCATTTTTACAATTCTGGTAACATTGAGGAACATGGCAGAACCTGTTAGGATGATCCCTGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCGTTTGACCGTCTTAGTAACTTTCTTCTTGATGAAGAACTAAACAATGATGATAGTGATAGAAGCTTAAGGCAATGTCCAGTTGATGCTGTGGAAATTCAAGATGGAAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAACACATGTGAATTTAGAAATCAAACAGGGACAGAAAGTAGCAGTTTGTGGACCTGTTGGAGCCGGAAAATCATCACTTTTGTATGCAATACTCGGAGAGATTCTTAAAATTTCAGGAACTGTTAATGTAGGTGGCACACTCGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGCGCCTTAGATATGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAACATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATGACTGTGTCATGACTTCCTTAAGAGAGAAAACAGTCGTTCTAGTTACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATATTGGTAATGGAAGGTGGAAAACTTATTCAATCAGGTAATTATGAGAATCTCCTGACAGCTGGAACAGCCTTTGAACTACTCATGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAGATAGTGAAAATAAAATAGGTTCTGAAAATGAGGTTTTGTCTAATCCTCAAGACTCTCATGGTTTTTATCTCACTAAAAATCAAAGCGAGGGAGAAATTTCTAGTATCAAGGGTCCAACTGGTGCACAACTTACACAACAGGAAGAAAAAGTGATTGGTGATGTTGGATGGAAGTCATTCTGGAATTATATTAATTATTCCAAAGGGTCATTCATGTTGTTTTTTATCGTGTTAGCACAATCTGTTTTTTTGTCTTTACAGACTTCGTCAACCTATTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACGAATGTCACCTTGATTGGAGTTTATGCATTAATTTCTTTTTCTAGTGCTGCTTTTATATATGTAAGAACTTACTTAACTGCGCTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCGAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCGGATTTGTGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCTATAACACTTGAAATTGTAGTGGTTACTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGCTCCTGCAATGGTTGCATCAATACTCATTCAGAATTATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGGACAACTAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACATGGAGTGGTTACTGTAAGAGCATTCAACATGTTAGACAGATTTTTCGAAAACTACTTAAAACTTGTGGATATGGACGCTTCACTGTTCTTTCATTCAAATGTGGCAATGGAATGGGTAATTCTAAGAGTTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTTCCTCAGGGATATGTATCCCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAGTATTTTGGACTAGATGGTTTTCCAACTTATCAAACTATATTATCTCAGTTGAAAGAATCAATCAATTCATTCACATACCAGCTGAGCCTCCTGCGATTGTCGATAATAACCAACCTCCATCTTCATGGCCTTCCAAGGGCATGATTGATCTTCAAGGCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTCATGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGTAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGACATTCTCATAGATGGGATTAATATATGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATCATTCCACAAGAACCAACACTTTTCAAGGGAAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCGGATGATGAAATATGGAAGGTTGTAGAGAAATGTCAGCTTAAGGAAACAATTGATAAGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGAGAAAGGCAATTGATTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACTGCTTCCATTGATTCTGCCACAGATGTGATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACAGAATTCCAACTGTAATAGACAGTGACATGGTGATGGTCTTATCTTATGGGAAACTTGTCGAATATGACGAGCCTTCAAAGCTAATGAACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGAAAGAATTCCTTCACAAACATAAGCAAACAGCAACTATGA 4410 0.3689 MSYFGNTIGDISWICLKNSDFNSLCSQKSLIDTINILFVCVYYTSLIITLIRKSSTNESHKKSWIFLIASMCCSVISIAFFSIGLSNLIAKTDNSNKLSCIIRGFIWISLTVSLLVQRIKWIRILNSIWWLSSCVLVSALNIHILFKDYDAIETFDIIIWLVHFLLLLCALKIFGYLGNHSVQECLSEPLLAQKIETKETGLDHATFLSKLIFSWVNSLLILGYSKPLDLEDIPSLVSEDEANTTYKKFVYAWESLVRERTKNNTKSLVLWSIVRTYLKENILIAFYALLRTISVAVSPLILYAFVNYSHRTKIDLKEGLSIVGILILTKLFESFSQRHWFFNSRRSGMKMRSALMAAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWSSALQLVLSTVILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSHFMIAQDTRLRSTSEILNSMKIIKLQSWEEKFKSLVESFRNREFVWLSKAQILKAFGSFLYWMSPTVISSVVFVGCIVSKSATLNAETIFTILVTLRNMAEPVRMIPEALSIMIQVKVSFDRLSNFLLDEELNNDDSDRSLRQCPVDAVEIQDGNFIWDHESVSPTLTHVNLEIKQGQKVAVCGPVGAGKSSLLYAILGEILKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDMDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTSLREKTVVLVTHQVEFLSEVDTILVMEGGKLIQSGNYENLLTAGTAFELLMSAHKDTITDLNQDSENKIGSENEVLSNPQDSHGFYLTKNQSEGEISSIKGPTGAQLTQQEEKVIGDVGWKSFWNYINYSKGSFMLFFIVLAQSVFLSLQTSSTYWLAIAIEIPKVTNVTLIGVYALISFSSAAFIYVRTYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLCILDFDIPYSITFVASITLEIVVVTCIMVSVTWQVLIVAAPAMVASILIQNYYQATARELIRINGTTKAPVMNFAAETSHGVVTVRAFNMLDRFFENYLKLVDMDASLFFHSNVAMEWVILRVEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQVFWTRWFSNLSNYIISVERINQFIHIPAEPPAIVDNNQPPSSWPSKGMIDLQGLEIRYRPNAPLVLKGITCTFHEGSRVGVVGRTGSGKSTLISALFRLVEPSTGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKVVEKCQLKETIDKLPSLLDSSVSDEGGNWSLGERQLICLGRVLLKRNRILVLDEATASIDSATDVILQRVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLVEYDEPSKLMNTNSSFSKLVAEYWSSCRKNSFTNISKQQL 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00566 1469 FunFam Multidrug resistance protein associated1 576 840 - -
Trre16g00566 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00566 1469 CDD ABC_6TM_ABCC_D1 283 571 IPR044746 GO:0140359
Trre16g00566 1469 CDD ABC_6TM_ABCC_D2 899 1192 IPR044726 GO:0140359
Trre16g00566 1469 Gene3D ABC transporter type 1, transmembrane domain 269 571 IPR036640 GO:0005524|GO:0016020
Trre16g00566 1469 FunFam ABC transporter C family member 10 265 579 - -
Trre16g00566 1469 SUPERFAMILY ABC transporter transmembrane region 890 1199 IPR036640 GO:0005524|GO:0016020
Trre16g00566 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 818 IPR027417 -
Trre16g00566 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 597 820 IPR003439 GO:0005524
Trre16g00566 1469 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Trre16g00566 1469 CDD ABCC_MRP_domain2 1215 1435 - -
Trre16g00566 1469 Gene3D - 1200 1451 IPR027417 -
Trre16g00566 1469 SUPERFAMILY ABC transporter transmembrane region 270 577 IPR036640 GO:0005524|GO:0016020
Trre16g00566 1469 CDD ABCC_MRP_domain1 597 797 - -
Trre16g00566 1469 Pfam ABC transporter transmembrane region 317 542 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00566 1469 Pfam ABC transporter transmembrane region 903 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00566 1469 FunFam ABC transporter C family member 5 867 1198 - -
Trre16g00566 1469 FunFam ABC transporter C family member 3 1200 1451 - -
Trre16g00566 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Trre16g00566 1469 Gene3D ABC transporter type 1, transmembrane domain 867 1198 IPR036640 GO:0005524|GO:0016020
Trre16g00566 1469 Gene3D - 572 843 IPR027417 -
Trre16g00566 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1453 - -
Trre16g00566 1469 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Trre16g00566 1469 SMART AAA_5 1243 1428 IPR003593 GO:0016887
Trre16g00566 1469 SMART AAA_5 624 797 IPR003593 GO:0016887
Trre16g00566 1469 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
Trre16g00566 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1450 IPR027417 -
Trre16g00566 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00566 Trre-Chr16 4181137 4188623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00566 597 862 Calmodulin-binding Proteins AT2G36910 25.175 2.41e-20 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00566 - - gmx:100784827 2235.68