Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00565 ATGGTTTACTTTGAGAATACAATGGGTGATTTCTCATTGATTTGTCTGAAAGATTTTGATTTCACTTCATTATGTTCTCTATGGAGCGCAATAGACACAGTCAATATACTTTTTGTCTGTGCTTACTACACGTCTTTGTTTATCAGTTTAATCAGAAAAACTTCTGCAAATAGGAGCCATACAAGAAGTTGGATTTTCAAACTTGTTTCAATCTGTTGTGCTCTTATTAGCATTACTTTTTTGGCTATTGGCTTGTGGAATCTCAGAGAGAAAACTGATAACTCTAAGGAGCTGAGCAGGTTAGCTTGCATTATCAAAGGAATCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGAGGCAAATGGATTAAAATACTAAACTCTATCTGGTGGACAACTTCCAGTGTATTGGTTTCAGCTCTCAACATTGACATTCTGTTCAAAGGTCATGATGCCTTTGAAACTTTTGATATCATAATATGGCTTGTACACTTTCTTCTACTATTATGTGCCTTCAAAAATCTTAGTTATTTAGGAACTAATAGTGTCCAAGATTGTTTGTCTGAACCACTATTAGCTCAGAAGATTGAAACTAAACAAACAGAACTAGCCCATGCTACTTTTCTTAGCAAGTTGATTTTCTCTTGGGTTAACTCTTTACTCAGTTTAGGTTACTCGAAGCCACTAGCTCCTGAAGACATACCTTCCCTTGTTTCTGAAGATGAAGCAAGCACTGCCTATCAAAACTTTGTGCATGCATGGGAATCCCTTGTAAAGGAGGGGACTAAGAACAGTACAAAGAGCTTGGTTCTTTGGTCTGTAGTTAAAACTTACTTAAAAGAAAACACATTAATAGCATTCTATGCACTACTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTACGCTTTTGTTAACTACTCAAAAAGAACTGAGCCTAATCTCAAAGAAGGCTTTTCTATAGTTGGTTTTCTAATTCTAGCCAAATTGGTGGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAATTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCAGGCGAAATTGTGAATTACATTGCAGTTGATGCATACAAAATGGGAGAATTCCCATGGTGGTTTCATATAACATGGACTTCTGTATTGCAACTTGTTCTGTCCATTGCTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTATTATATGTGGACTTCTCAATGTACCGTTTGCAAGGATCCTACAAAATTGTCAGGCACAGTTTATGACTGCACAGGACGAACGTCTTCGATCAACTTCAGAAATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTTAAGAACTTAGTCGAGTCGTTACGCGATAAAGAGTTTGTATGGTTGTCTAAAGCGCAGATCCTGAAAGCTTCTAGTTCATTTCTTTTTTGGCTGTCTCCTACAGTTATATCTGCTGTTGTTTTCATTGGATGTGCCGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAAGAACATGGGAGATCCAGTAAAAATGATCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTTGATCGTCTTAATAAATTTTTGCTTGATGAAGAACTAAAAAATGATGAAAAAAGTGAAAGAAACATAAAGCAATGTTCAGGTAATGCTGTCGAAATTCAAGGTGGCAACTTCACTTGGGATCATGAATCTGTGTCCCCGGCTTTAACAGATGTTAGTTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCAAGGAACTGTTAATGTAGCCGGCACCCTTGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAATGCTATTAAAGCATGTGCTTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTAAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTTTACAGAGATGCTGATATCTATCTCCTTGACGACCCTTTCAGTGCAGTCGACGCGCACACTGCTGCTATTCTGTTCAAGGACTGTGTTATGACTGCTCTACGAGAGAAAACAATCATTCTTGTGACACATCAAGTGGAGTTTCTACCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTCATTCAATCAGGCAGTTATGAGAATCTGCTGACAGCTGGGACAGCCTTGTGA 2457 0.3797 MVYFENTMGDFSLICLKDFDFTSLCSLWSAIDTVNILFVCAYYTSLFISLIRKTSANRSHTRSWIFKLVSICCALISITFLAIGLWNLREKTDNSKELSRLACIIKGIIWISLTVSLLVQRGKWIKILNSIWWTTSSVLVSALNIDILFKGHDAFETFDIIIWLVHFLLLLCAFKNLSYLGTNSVQDCLSEPLLAQKIETKQTELAHATFLSKLIFSWVNSLLSLGYSKPLAPEDIPSLVSEDEASTAYQNFVHAWESLVKEGTKNSTKSLVLWSVVKTYLKENTLIAFYALLRTISVVVSPLILYAFVNYSKRTEPNLKEGFSIVGFLILAKLVESLSQRHWFFNSRRSGMKIRSALMVAIYQKQLKLSSSARTRHSAGEIVNYIAVDAYKMGEFPWWFHITWTSVLQLVLSIAILFGVVGIGALPGLVPLIICGLLNVPFARILQNCQAQFMTAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWLSPTVISAVVFIGCAVSKSAPLNAETIFTVLATLKNMGDPVKMIPEALSIMIQVKVSFDRLNKFLLDEELKNDEKSERNIKQCSGNAVEIQGGNFTWDHESVSPALTDVSLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVAGTLAYVSQSSWIQSGTVRDNILFGKPMDKTRYENAIKACALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYRDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTIILVTHQVEFLPEVDTILVMEDGKVIQSGSYENLLTAGTAL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00565 818 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524|GO:0016887
Trre16g00565 818 Gene3D ABC transporter type 1, transmembrane domain 260 583 IPR036640 GO:0005524|GO:0016020
Trre16g00565 818 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00565 818 SMART AAA_5 628 801 IPR003593 GO:0016887
Trre16g00565 818 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Trre16g00565 818 FunFam ABC transporter C family member 10 268 582 - -
Trre16g00565 818 Gene3D - 596 818 IPR027417 -
Trre16g00565 818 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 818 IPR003439 GO:0005524
Trre16g00565 818 Pfam ABC transporter 619 753 IPR003439 GO:0005524
Trre16g00565 818 FunFam Multidrug resistance protein associated1 579 818 - -
Trre16g00565 818 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 814 - -
Trre16g00565 818 SUPERFAMILY ABC transporter transmembrane region 273 580 IPR036640 GO:0005524|GO:0016020
Trre16g00565 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 814 IPR027417 -
Trre16g00565 818 Pfam ABC transporter transmembrane region 298 546 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00565 818 CDD ABCC_MRP_domain1 601 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00565 Trre-Chr16 4165279 4170280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00565 601 815 Calmodulin-binding Proteins AT2G36910 27.511 4.73e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00565 - - lja:Lj3g3v2693530.1 1268.83