Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00564 ATGGCTTACTTTTGGAACTCAATTGGTGAAATTTCATGGATTTGTTTGAAGAATTTTGATTTGAATTCTTTATGTTCTCAAAGGAGCTTAATAGACACAATCAATATACTGTTTCTATGTGTCTACTTCACATCTTTGATTATCACTATAATCAGAAAAACTTCTACAAATGAAAGCCACAGAAAAATCTGGATTTTCCTTATTGTTTCAATTTGTTGTGGTGTTATTAGCATTGCATTTTTTAGTATTGGATTGTGGAATATCATAGCAAAAACTGATAACTCTGAGAAATTGATTTGCATGATCAAAGGATTCATTTGGATTTCTCTTGCTGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATCTTCATGTTTATTGGTTTCAGCTATCAACATTGAAATTCTGTTCAAAAATCATGCAATTGAAGCTATTGAAATTGTACAGTGGCTTGTACATTTCCTTCTTTTGTATTGTGCCTTCAAAAATATTGGTTATTTAGGAAATAATAGTGCTCAAGAAGGTTTATCTGAGCCACTATTTGGTAAAAAAAATGAAACTAATCAAACAGGATTTGGTCATGCTAATTTCATAAGCAAGTTGATTTTCTGCTGGGTTAATTCTTTACTCAGTTTAGGTTACTCGAAGCCGCTAGATCTTGAAGATATACCTTCCCTAGATTCTGATGATGAAGCAAACATGGCTTATCAAAAATTTGTTCAAGCTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAACAGTTTGGTTCTTTGGTCTATAGTTAGAATTTACTTGAAAGAAAATTTATTAATAGCATTCTATGCATTTATCAGAACAATTTCTGTTGTAGTTTCACCACTTATATTGTATGCTTTTGTTAGCTACTCAAATAGAACTGAGGAAGATCTTAGAAAAGGTCTTTCCATAGTTGGTTTTTTAATTGTCACCAAAGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCAAGGAGGTCTGGTATGAAAATGAGATCAGCTTTAATGGTGGCAGTTTATCGGAAGCAGTTAAAGCTTTCTAGCTCGGCGAGAACAAGACATTCGGCAGGTGAAATTGTGAATTATATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAACTTGTTCTTTCCATTGGTGTTCTTTTCGGTGTTGTTGGTATCGGTGCTCTTCCTGGTTTAGTACCTCTAGCTGTTTGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAGTCACAGTTTATGATTGCACAGGACGAACGTCTTCGCTCGACTTCGGAGATTCTAAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTGGTTGAGTCGCTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGATCCTGAAAGCTACTAATTCATTTCTTTATTGGATGTCTCCTACGGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCGGGAGTGCACCTTTGAATGCTGAAACCATTTTCACAATTCTTGCAACATTGAGGAACATGGGAGAACCGGTTAGAATGATCCCTGAGGCACTATCTATTATGATTCAAGTTAAGGTTTCGTTGGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAGATACTTACAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAAGAGATGTGAATCTAGAAATCAAACAAGGACAGAAAATTGCAATTTGTGGACCTGTTGGAGCCGGTAAATCGTCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACACAACAAGATACGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAGTGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAATATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTATAATGACGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTCGATGCACATACAGCTTCGATATTATTCAATGATTGTGTGATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCCGATGTTGATTCTATCTTGGTAATGGAGGGTGGGAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACATCCGGAACAGCCTTTGAACAACTTGTGAGTGCTCATAAAGACACAATTACTGACTTGAATCGAGATAATGAAAATAAAAACAGTTCTGAAATTGAGGTTTTGACTAAAAATCAAAGTGAGAGAGAGATTTCTAATATCAAGGGACCAATTGGTACACAGCTTACACAAGAGGAGGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCAGGGATTATATTAATTATTCCAAAGGGACATTCATGCTGTGTTTGATGATTTTAGCACAATCAGCTTTTTTGGCTTTGCAGACTGCCTCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGTCACCTTGATTGGAGTTTATGCATTGACTTCTTTTGCTAGTGCTGCTTTTGTTTATGTAAGATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACCGCTTTCTTCTCAAGCTTCACTAAAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGCAATAACTATAGCAATTGAAGTTTTGGTGATAATTTGTATAATGGTTTCAGTGACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTGGCATCAATATGCGTTCAGCAATATTATCAAGCCACTGCAAGTGAATTAATACGGATCAATGGAACAACCAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGGTTTTTCAAAAGCTACTTACAACTTGTGGACACAGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATCCTACTACCTCAGGGATATGTATCCCCAGGCCTTGTGGGACTGTCACTCTCTTATGCATTTACCTTGACAGGAGCCCAAATATTTTGGAGTAGATGGTTTTCCAACCTGTCAAACTATATTATCTCTGTTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATGGTAACCAACCTCCATCTTCATGGCCGTCCAAAGGAAAGATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGTCGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCGAGAGGTGATATTCTCATTGATGGGATGAACATTTGCTCAATGGGGTTGAAAGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCCGATGATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTGCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTCTAGATGAGGCTACTGCATCCATTGACTCGGCCACAGATGCCATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCCTGGTTTTATCTTATGGTAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTTCACAAATATTAGCAGCCAGCACCAATGA 4374 0.3754 MAYFWNSIGEISWICLKNFDLNSLCSQRSLIDTINILFLCVYFTSLIITIIRKTSTNESHRKIWIFLIVSICCGVISIAFFSIGLWNIIAKTDNSEKLICMIKGFIWISLAVSLIVQRVKWIRILNSIWWLSSCLLVSAINIEILFKNHAIEAIEIVQWLVHFLLLYCAFKNIGYLGNNSAQEGLSEPLFGKKNETNQTGFGHANFISKLIFCWVNSLLSLGYSKPLDLEDIPSLDSDDEANMAYQKFVQAWESLVRERTKNNTNSLVLWSIVRIYLKENLLIAFYAFIRTISVVVSPLILYAFVSYSNRTEEDLRKGLSIVGFLIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWTCALQLVLSIGVLFGVVGIGALPGLVPLAVCGLLNVPFARIIQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQILKATNSFLYWMSPTVVSAVVFLGCAVTGSAPLNAETIFTILATLRNMGEPVRMIPEALSIMIQVKVSLDRLNKFLLDEELNNDDSERYLQQCSVNAVEIQDGNFIWDHESVSPTLRDVNLEIKQGQKIAICGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDTTRYEKAIKACALDKDISDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTALREKTVILVTHQVEFLSDVDSILVMEGGKVIQSGSYENLLTSGTAFEQLVSAHKDTITDLNRDNENKNSSEIEVLTKNQSEREISNIKGPIGTQLTQEEEKVIGNVGWKPFRDYINYSKGTFMLCLMILAQSAFLALQTASTFWLAIAIEIPKVTNVTLIGVYALTSFASAAFVYVRSYLTALLGLKASTAFFSSFTKAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFAITIAIEVLVIICIMVSVTWQVLIVAVPAMVASICVQQYYQATASELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKSYLQLVDTDASLFFHSNVTMEWVVLRIEALQNLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPAEPPAIVDGNQPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSAVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVLVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFTNISSQHQ 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00564 1457 Pfam ABC transporter 1222 1370 IPR003439 GO:0005524
Trre16g00564 1457 Gene3D ABC transporter type 1, transmembrane domain 859 1186 IPR036640 GO:0005524|GO:0016020
Trre16g00564 1457 Gene3D ABC transporter type 1, transmembrane domain 256 578 IPR036640 GO:0005524|GO:0016020
Trre16g00564 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1438 IPR027417 -
Trre16g00564 1457 SMART AAA_5 1231 1416 IPR003593 GO:0016887
Trre16g00564 1457 SMART AAA_5 623 796 IPR003593 GO:0016887
Trre16g00564 1457 FunFam Multidrug resistance protein associated1 575 839 - -
Trre16g00564 1457 FunFam ABC transporter C family member 3 1188 1439 - -
Trre16g00564 1457 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016020
Trre16g00564 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 893 1155 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00564 1457 Pfam ABC transporter transmembrane region 283 541 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00564 1457 Pfam ABC transporter transmembrane region 925 1155 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00564 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 818 IPR027417 -
Trre16g00564 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1207 1439 IPR003439 GO:0005524
Trre16g00564 1457 ProSitePatterns ABC transporters family signature. 721 735 IPR017871 GO:0005524|GO:0016887
Trre16g00564 1457 FunFam ABC transporter C family member 10 264 578 - -
Trre16g00564 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 596 819 IPR003439 GO:0005524
Trre16g00564 1457 Gene3D - 603 850 IPR027417 -
Trre16g00564 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00564 1457 CDD ABC_6TM_ABCC_D2 887 1180 IPR044726 GO:0140359
Trre16g00564 1457 Gene3D - 1189 1439 IPR027417 -
Trre16g00564 1457 FunFam ABC transporter C family member 5 856 1186 - -
Trre16g00564 1457 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Trre16g00564 1457 Pfam ABC transporter 614 748 IPR003439 GO:0005524
Trre16g00564 1457 CDD ABCC_MRP_domain2 1203 1423 - -
Trre16g00564 1457 CDD ABCC_MRP_domain1 596 796 - -
Trre16g00564 1457 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1441 - -
Trre16g00564 1457 SUPERFAMILY ABC transporter transmembrane region 877 1187 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00564 Trre-Chr16 4151000 4157007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00564 596 847 Calmodulin-binding Proteins AT2G36910 26.087 1.66e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00564 - - gmx:100784827 2266.89