Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00563 ATGGATTATATATATCCAGGTGAAATTTCTGAGCCACTGCTAGAACAGAAAGTTGAAAGAAAACAAACAGGAATAGGCCATGCTACTTTTCACAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTTAGTTTAGGTTACTCAAAGCCACTAGCTCTTGAAGATATACCTTCTCTTGTTCCTGAAGATGAATCAAACATGGCTTATCAAAAATTTGTTCATGCTTGGGAATCACTTATTAGAGATAGGACTAAGAACAATACAAACAGTTTGGTTCTTTGGTCTATAGTTAGAATTTACTTCAAAGAAAATTTATTAATAGCATTTTCTTTGGTTCTTTGGTCTGTTGTAGTTTCACCTCTAATATTGTATGCTTTTGTTAACTACTCAAATAGAACTGAAAAAAATCTTAGAGAAGGTCTTTCCATTGTTGGTTTTTTGATTGTCACAAAAGTATTTGAGTCTTTGTTTCAAAGACATTGGATTTTTAATTCAAGGAGATCAGGAATGAAAATGAGATCAGCTCTAATGGTGGCAGTTTACCAAAAGCAGCTAAGGCTTTCTAGCTCAGCAAGAACAAGACACTCGGCTGGCGAAATTGTAAATTATATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATACAACATGGACTTCTGCATTGCAACTTATTCTTTCTATTGGTGTTCTTTTTGGTGTAGTTGGCATTGGTGCTCTTCCTGGTTTAGTACCTCTTGTTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAATCACAGTTTATGATTGCACAGGACGAACGTCTTCGGTTGACTTCTGAGATTCTAAATAATATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTTGAGTCGCTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGTTTTTGAAAGCTACTAATTCATTTCTTTATTGGATGGCTCCTACAGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGCTATTACCGGGAGTGCACCTTTGAATGCTGAAACCATTTTCACAATTCTCGCAACATTGAGAAATATGGGAGAACCTGTTAGAATGATCCCTGAGGGTTTATCTATTATGATTCAAAATAAGGTTTCGTTGGATCGTCTTAATAAGTTTTTGCTTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACAGCAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAAAAGATGTGAATTTAGAAATCAAACCGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAGTCGTCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTAGGTGGCACACTAGCCTATGTCTCTCAATCTTCTTGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCATGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGCGCCTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACCGAAATTGGTCAGAGGGGGATCAACATGAGTGGAGGGCAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTTAGTGCAGTTGATGCGCATACAGCGGCAATACTATTCAATGATTGTGTGATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATTCTATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTGACAGCTGGAACAGCCTTTGAACTGCTTGTGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAGATAATCAAAATAAAAATGGTTTTGAAAATGAGGTTTTGACTAAAACTCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCACAGCTTACACAAGAGGAAGAAAAAGTGATTGGTAATCTTGGATGGAAGCCATTCTGGGATTATATTAACTATTCGAAAGGGACATTCATGCTGTGTTTGATTATATTAGTACATTCTGTTTTTGTGGCTTTCCAGACTGCCTCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATGCATTAATTTCTTTTGCTGGTGTTGCTTTTGTTTATGTAAAATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCGAGCTTCACTACAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCTTCAGATTTAAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATGTGTAGGAATTGAAATTTTGGTGATGATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAACGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGTGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGCAGACAGATTTTTCAAAAACTACTTACAACTTGTGGACACAGATGCTTCACTGTTCTTTCACTCTAATGTGACAATGGAATGGGAAATTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTACCTCAGGGATATGTATCCCCGTGTCTTGTGGGACTGTCACTCTCTTATGCTTTTACCTTGACAGCAGGCCAAATATTTTGGACTAGATGGTTTTCCAACTTATCAAATTATATTATATCTGTTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATGATAACCGACCTCCATCTTCATGGCCGTCCAAGGGAAAAATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGGGAGTCGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCGAAAGGTGATATTCTCATTGATGGGATGAACATTTGCTCAATGGGGTTGAAAGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGTAAGCTACCAAGTCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTCTAGATGAGGCTACTGCATCCATTGACTCTGCCACAGATGCCATTCTCCAAAGAGTGATTAGAAAAGAATTTGCAGAATGCACAGTAATAACGGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCCTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATCCTTTCACAAATATTAGCAGCCAGCATCAATGA 3840 0.3773 MDYIYPGEISEPLLEQKVERKQTGIGHATFHSKLIFSWVNSLLSLGYSKPLALEDIPSLVPEDESNMAYQKFVHAWESLIRDRTKNNTNSLVLWSIVRIYFKENLLIAFSLVLWSVVVSPLILYAFVNYSNRTEKNLREGLSIVGFLIVTKVFESLFQRHWIFNSRRSGMKMRSALMVAVYQKQLRLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHTTWTSALQLILSIGVLFGVVGIGALPGLVPLVICGLLNVPFARIIQNCQSQFMIAQDERLRLTSEILNNMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQFLKATNSFLYWMAPTVVSAVVFLGCAITGSAPLNAETIFTILATLRNMGEPVRMIPEGLSIMIQNKVSLDRLNKFLLDEELNNDDSERNLQQCSVNAVEIQDGNFIWDHESVSPTLKDVNLEIKPGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTLAYVSQSSWIQSGTVQDNILFGMPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDSILVMEGGKVIQSGSYENLLTAGTAFELLVSAHKDTITDLNQDNQNKNGFENEVLTKTQSEGEISSIKGPIGAQLTQEEEKVIGNLGWKPFWDYINYSKGTFMLCLIILVHSVFVAFQTASTFWLAIAIEIPKVTNATLIGVYALISFAGVAFVYVKSYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVACVGIEILVMICIMVSVTWQVLIVAVPATVASIYIQQYYQATASELIRINGTTKAPVMNFAAETSLGVVTVRAFNMADRFFKNYLQLVDTDASLFFHSNVTMEWEILRIEALQNLTVITAALLLILLPQGYVSPCLVGLSLSYAFTLTAGQIFWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDDNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSKGDILIDGMNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRKEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNPFTNISSQHQ 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00563 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1029 1261 IPR003439 GO:0005524
Trre16g00563 1279 FunFam ABC transporter C family member 3 1010 1261 - -
Trre16g00563 1279 Gene3D - 425 671 IPR027417 -
Trre16g00563 1279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 1263 - -
Trre16g00563 1279 Gene3D - 1010 1261 IPR027417 -
Trre16g00563 1279 Gene3D ABC transporter type 1, transmembrane domain 681 1008 IPR036640 GO:0005524|GO:0016020
Trre16g00563 1279 Gene3D ABC transporter type 1, transmembrane domain 81 400 IPR036640 GO:0005524|GO:0016020
Trre16g00563 1279 FunFam ABC transporter C family member 10 88 400 - -
Trre16g00563 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00563 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1260 IPR027417 -
Trre16g00563 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00563 1279 Pfam ABC transporter transmembrane region 109 363 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00563 1279 Pfam ABC transporter transmembrane region 714 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00563 1279 CDD ABCC_MRP_domain2 1025 1245 - -
Trre16g00563 1279 ProSitePatterns ABC transporters family signature. 543 557 IPR017871 GO:0005524|GO:0016887
Trre16g00563 1279 SUPERFAMILY ABC transporter transmembrane region 698 1009 IPR036640 GO:0005524|GO:0016020
Trre16g00563 1279 CDD ABCC_MRP_domain1 418 618 - -
Trre16g00563 1279 Pfam ABC transporter 436 570 IPR003439 GO:0005524
Trre16g00563 1279 FunFam ABC transporter C family member 5 678 1008 - -
Trre16g00563 1279 Pfam ABC transporter 1044 1192 IPR003439 GO:0005524
Trre16g00563 1279 FunFam Multidrug resistance protein associated1 397 661 - -
Trre16g00563 1279 CDD ABC_6TM_ABCC_D2 709 1002 IPR044726 GO:0140359
Trre16g00563 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 639 IPR027417 -
Trre16g00563 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 641 IPR003439 GO:0005524
Trre16g00563 1279 CDD ABC_6TM_ABCC_D1 106 392 IPR044746 GO:0140359
Trre16g00563 1279 SMART AAA_5 1053 1245 IPR003593 GO:0016887
Trre16g00563 1279 SMART AAA_5 445 618 IPR003593 GO:0016887
Trre16g00563 1279 SUPERFAMILY ABC transporter transmembrane region 93 398 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00563 Trre-Chr16 4140460 4145902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00563 405 672 Calmodulin-binding Proteins AT2G36910 24.915 8.84e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00563 - - gmx:100784827 2020.36