Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00562 ATGATCAAAGGATTCATTTGGATTTCTCTTGCTGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATCTTCATGTGTATTGGTTTCAGCTATCAACATTGAAATTCTGTTCAAAAATCATGCAATTGAAGCTATTGAAATTGTACAGTGGCTTGTACATTTCCTTCTTTTGTATTGTGCCTTCAAAAATATTGGTTATTTAGGAAATAATAGTGCTCAAGAAGGTTTATCTGAGCCACTATTAGGTAAAAAAAATGAAACTAATCAAACAGGATTTGGTCATGCTAATTTCATAAGCAAGTTGATTTTCTGCTGGGTTAATTCTTTACTCAGTTTAGGTTACTCGAAGCCGCTAGATCTTAAAGATGTACCTTCCCTAGATTCTGATGATGAAGCAAACATGGCTTATCAAAAATTTGTTCATGCTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAACAGTTTGGTTCTTTGGTCTATAGTCAGAATTTACTTCAAAGAGAACTTATTAATAGTTTTTTATGCATTAATCAGAACTTTTTCTGTAGTAGTTTCTCCTTTAATATTGTATGCTTTTGTTAACTACTCGAATATAACCGAGAAAGATCTTAGAGAAGGTCTTTCCATAGTTGGTATTTTGATTGTCACCAAAGTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCGGCTCTGATGGTGGCAGTTTATCGAAAGCAGCTAAGGCTTTCTAGCTCGGCAAGGACAAGACACTCGGCTGGCGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATAGAACATGGACTTCTGCATTGCAACTTATTCTTTCTGCATTTGGAACAGTTCGAGATAATATACTCTTTGGCAAGCCAACGGACAGAACAAGATATGAGAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAGTGATTTTAGACATGGTGATCTTACAGAAATTGGTCAGAGAGGGATTAATATGAGCGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCCGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAGTGATTGTGTCATGACTGCGTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGATGTTGATTCTATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTAACAGCTGGAACAGCCTTTGATCTACTTATTGCATCAACTTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAATAACTAACACCACCTTGATTGGTGTTTATGCATTAGTTTCTTTTTCTAGTTCTGGTTTGGTTTATGTAAGATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCATCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTGTTCCATCACCTTTGTAGCATCTATAGCGATTGAAATTTTGGTGATAATTTGTGTAATGGTTTCTGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATTCATTCAGCAATATTATCAAGCCACTGCAACTCAACTAATACGGATCAATGGAACAACCAAAGCTCCAATCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACCGTAAGAGCATTCAACATGGTAGATAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCCTCACTGTTTTTTCACTCTAATGAGACAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACGGTCATTACTTTAGCTTTGTTGCTTATTCTACTACCTCAGAGATATGCATCCCCAGGCCTTGTTGGACTGTCTCTTTCCTATGCTTTTACCTTGACGGGAAACCAAATAAATTGGACTAGATGGTTTTCCAATCTATCTAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGATAACAACCGACCTCCATCTTCATGGCCCTCCAAGGGCAAGATTGACCTTCAAGGTTTGGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATTAGTGCTTTATTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGTATGAACATATGTTCAATGGGGTTGAAGGATTTGAGAATGAGACTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATTTGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCCTGGACTCTGCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAATGCCAATTGTTTTGTCTTGGAATTCTTGTTCTAGATGAGGCTACTGCATCCATTGACTCGGCCACAGATGCCATTCTCCAAAGAGTGATTAGAAAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTTTATCCTATGGGAAATTGGTTGAATTCGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTTTCTAAGCTGGTAGCTGATTATTGGTCCAGTTGCAGGAAGAATTCCTTAACAAATATTAGCAGCCAGCAGCGATGA 3003 0.377 MIKGFIWISLAVSLIVQRVKWIRILNSIWWLSSCVLVSAINIEILFKNHAIEAIEIVQWLVHFLLLYCAFKNIGYLGNNSAQEGLSEPLLGKKNETNQTGFGHANFISKLIFCWVNSLLSLGYSKPLDLKDVPSLDSDDEANMAYQKFVHAWESLVRERTKNNTNSLVLWSIVRIYFKENLLIVFYALIRTFSVVVSPLILYAFVNYSNITEKDLREGLSIVGILIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLRLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHRTWTSALQLILSAFGTVRDNILFGKPTDRTRYEKAIKACALDKDISDFRHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFSDCVMTALREKTVILVTHQVEFLSDVDSILVMEGGKVIQSGSYENLLTAGTAFDLLIASTFWLAIAIEIPKITNTTLIGVYALVSFSSSGLVYVRSYLTALLGLKASTAFFSSFTTAIFNASMLFFDSTPVGRILTRASSDLSILDFDIPCSITFVASIAIEILVIICVMVSVTWQVLIVAVPAMVASIFIQQYYQATATQLIRINGTTKAPIMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNETMEWVVLRIEALQNLTVITLALLLILLPQRYASPGLVGLSLSYAFTLTGNQINWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSAVSDEGGNWSLGQCQLFCLGILVLDEATASIDSATDAILQRVIRKEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEFDEPSKLMDTNSSFSKLVADYWSSCRKNSLTNISSQQR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00562 1000 Gene3D - 311 448 IPR027417 -
Trre16g00562 1000 ProSitePatterns ABC transporters family signature. 360 374 IPR017871 GO:0005524|GO:0016887
Trre16g00562 1000 Gene3D ABC transporter type 1, transmembrane domain 168 310 IPR036640 GO:0005524|GO:0016020
Trre16g00562 1000 SMART AAA_5 296 435 IPR003593 GO:0016887
Trre16g00562 1000 SMART AAA_5 782 967 IPR003593 GO:0016887
Trre16g00562 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 981 IPR027417 -
Trre16g00562 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 454 IPR027417 -
Trre16g00562 1000 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 454 704 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00562 1000 CDD ABC_6TM_ABCC_D2 445 730 IPR044726 GO:0140359
Trre16g00562 1000 FunFam ABC transporter C family member 5 443 736 - -
Trre16g00562 1000 Gene3D ABC transporter type 1, transmembrane domain 449 736 IPR036640 GO:0005524|GO:0016020
Trre16g00562 1000 CDD ABCC_MRP_domain2 753 966 - -
Trre16g00562 1000 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 456 984 - -
Trre16g00562 1000 Gene3D - 738 982 IPR027417 -
Trre16g00562 1000 SUPERFAMILY ABC transporter transmembrane region 470 737 IPR036640 GO:0005524|GO:0016020
Trre16g00562 1000 Pfam ABC transporter 314 387 IPR003439 GO:0005524
Trre16g00562 1000 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 757 982 IPR003439 GO:0005524
Trre16g00562 1000 Pfam ABC transporter 772 911 IPR003439 GO:0005524
Trre16g00562 1000 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 225 458 IPR003439 GO:0005524
Trre16g00562 1000 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 181 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00562 1000 FunFam Multidrug resistance-associated protein member 4 739 983 - -
Trre16g00562 1000 FunFam Multidrug resistance associated protein, putative 324 392 - -
Trre16g00562 1000 Pfam ABC transporter transmembrane region 475 704 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00562 1000 Pfam ABC transporter transmembrane region 182 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g00562 1000 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Trre16g00562 1000 SUPERFAMILY ABC transporter transmembrane region 169 310 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00562 Trre-Chr16 4131954 4136961 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00562 753 980 Calmodulin-binding Proteins AT2G36910 30.992 1.14e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00562 - - gmx:100784827 866.3