Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00554 ATGCAAGACCCAACAACATTCCAACCCATGAAACCAAATTTTCCAGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAGCAACACAAAATTCTGTTACTACAACAACTATAATCTCTCACAACCTCGTCATTTTTGCAAAAACTGTAAAAGGTATTGGACCAAAGGTGGTTCTTTAAGGAACATTCCTGTTGGTGGTGGAACAAGAAAAGCCACAAAACGTTCATCAAATCCCAAACGTTCAACAACACCATCGTTATCTTCTTCAGCTCAAGCTTCTCCAGTTACAGAATCTGACCCGACCCAGATTAAGAATAACCCGGTTGAGGAAAACCAAAGGGTGTTTGGTGGAGGGAGTTTTAGTTCACTTCTTGAATCAACTGAGAGATTTGGGAATCTTTTTCAGGGTTTGAATTCAAATGGGTCGGGTTTAAAAATGGTGCAAATGGGTGAATTTGGGGAGAATTTGAACTGTGACCCGGTTGGGAATTCGGGTCATAATAACCCGAATGGTAGAAATGGTGAATCAGAGATTTTTCTTGGTTTGCCAAATGGTGGTGATTCAAGTTGTTGGAATGGTAATCATGGTTGGTCTGATCTTGCAATATATACACCTAGCTCAAGTTATCAGTAG 636 0.4009 MQDPTTFQPMKPNFPEQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKATKRSSNPKRSTTPSLSSSAQASPVTESDPTQIKNNPVEENQRVFGGGSFSSLLESTERFGNLFQGLNSNGSGLKMVQMGEFGENLNCDPVGNSGHNNPNGRNGESEIFLGLPNGGDSSCWNGNHGWSDLAIYTPSSSYQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00554 211 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 141 IPR045174 GO:0003700|GO:0006355
Trre16g00554 211 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Trre16g00554 211 MobiDBLite consensus disorder prediction 78 110 - -
Trre16g00554 211 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Trre16g00554 211 MobiDBLite consensus disorder prediction 61 115 - -
Trre16g00554 211 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00554 Trre-Chr16 4077991 4078626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00554 5 135 C2C2-Dof Transcription Factor Family AT1G51700 53.020 1.45e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g00554 zf-Dof 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00554 - - zju:107403899 279.256