Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00536 ATGGCGACAGTACCAGGGCCACTCGTATGGGAGATCGTGAAGAAGAACAACTCATTTTTGGTGAAAGAGTTTGGAAATAACACTCAGAGTGTTCAATTCAGCAGAGAGAGTAACAATCTCTACAATCTCAACTCTTACAAGTTCTCTGGTTTGGCAAATAAGAAAACTGTTACCATTCAGCCTGCTGGTAAAGATCAGTCTGTGTTGTTGGCTACAACAAAGGCAAGGAAGCAAAACAAGCCTTCTGCTTTGACTCACAAATCAATCATGAAGAAGGAGTTCCGCAGGATGGCAAAGGCTGTTCAAAATCAGGTGGCAGATAATTACTACAGGCCTGATCTGAAGAAGGCAGCTCTTGCAAGGCTTAGTGCAGTTCACAGAAGCCTGAAAGTTGCCAAGTCCGGTGTCAAGAAGAGGAATAGACAAGCTTTGAAGGTCCATGGCAGGAAGTGA 453 0.4415 MATVPGPLVWEIVKKNNSFLVKEFGNNTQSVQFSRESNNLYNLNSYKFSGLANKKTVTIQPAGKDQSVLLATTKARKQNKPSALTHKSIMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQALKVHGRK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00536 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Trre16g00536 150 Gene3D - 7 133 - -
Trre16g00536 150 FunFam 60S ribosomal protein L28 5 133 - -
Trre16g00536 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00536 Trre-Chr16 3967020 3968705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00536 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.727 9.33e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00536 K02903 - gmx:100499921 262.307