Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00524 ATGGATGGTTTGAATTGGGATGGCTCACAACTTGAAGAGAACACACCATTTATGTGGAATACTCAAAACTTTGAAGGAGGTTACAACATATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGGAAACACATATTCAAATTCTGAAAGAGTGATTCCAAACACAAATCTTTCACAGCATGCAACAACCATGGCAGTCAAATCAAAAGCTGGATCCAGCTGGAAGGAAGAACCTTTAATACCTCAATCATATAAGTCTCTTTCACCTTACAATATTATGCCAGATTTCAACATGGCCCACCAACAACAAAAACTCAACAACTCTTTTGATTGTTTGCTTTCTGCTAGTAATAGCAACACAGCAGACACTTCTGTTGAAAATGATGATGATGGAATTTCAAAGTTATTTTCTGACTGCAAAAATTTATGGAACTTCAGTTATGTCAGTAACACAACTTCCTCTGGTGAAGCTGATAGTAATGTTTCAAATGAGTGTACAAGAAAGAAAGACATTCAGTGTCCACTCAGTATTGAACTTGATGAAACAATGTCTCAAAGCTCATCAGATGGTTTTAGACTTATCACTGAAAAACCACCAAAAAGCAAGAAACCAAGATATGATAAGGGACCTTGTTCAACTAATATAAATTTTCAACAACCAAATTCATCATCATCAATGTGTTATTCATCTTCAAATGAAGAACCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGACCAGTGAATTTTGGAATAGATGATATTGATGTGATTGAAAAAAAGCCAAAGAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACATAGAAGGGAAAGAATAAGTGATAGGATTAGGGTTTTGCAAAAGATTGTTCCTGGTGGAAACAAAATGGATACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATTCAATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCACATGCAAATTCCTAATCAAAACAATCATCATTCACAGGGTTAA 1134 0.3501 MDGLNWDGSQLEENTPFMWNTQNFEGGYNISNSLTHQIQEMHKVQIGNTYSNSERVIPNTNLSQHATTMAVKSKAGSSWKEEPLIPQSYKSLSPYNIMPDFNMAHQQQKLNNSFDCLLSASNSNTADTSVENDDDGISKLFSDCKNLWNFSYVSNTTSSGEADSNVSNECTRKKDIQCPLSIELDETMSQSSSDGFRLITEKPPKSKKPRYDKGPCSTNINFQQPNSSSSMCYSSSNEEPDPEAIAQMKEMMYRAAAFRPVNFGIDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISDRIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQVKALESLGNKVNSMDCNPTSIAFSFNPSFHMQIPNQNNHHSQG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00524 377 SMART finulus 288 337 IPR011598 GO:0046983
Trre16g00524 377 Gene3D - 287 350 IPR036638 GO:0046983
Trre16g00524 377 Pfam Helix-loop-helix DNA-binding domain 292 331 IPR011598 GO:0046983
Trre16g00524 377 MobiDBLite consensus disorder prediction 187 221 - -
Trre16g00524 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 288 341 IPR036638 GO:0046983
Trre16g00524 377 CDD bHLH_AtIND_like 283 341 - -
Trre16g00524 377 Coils Coil 321 341 - -
Trre16g00524 377 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 119 369 IPR045843 GO:0003700|GO:0006355
Trre16g00524 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00524 Trre-Chr16 3895351 3896703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00524 106 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.962 3.08e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g00524 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00524 - - psat:127076443 455.677