Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00518 ATGGCAGCACCAGGAGGCGGAATGTTAGACGGAGTACAGACGGCGCAACCGCCAGGAACCGACATGACTGGCATTTGCTTCAGAGATCAATTATGGCTCAACACTTACCCTCTCGATCGTAACCTCGTCTTCGATTACTTCGCTTTATCACCTTTCTACGATTGGACTTCCAACAACGAACAACTCCGAATGCGATCTCAACATCCACTCGATCTCTCTCAACTTACGAAAATGACGGGTATAGAGTATGTGTTGAGTGAAGTAATGGAGCCTCATCTTTTCATTATGAGGAAGCAAAAGAGGGATGGACCTGATAAAATTACTGCAATGCTTGCTTATTACATTTTGGATGGTTCTATTTATCAAGCTCCACAATTATCCAATGTTTTTGCTGCTAGAATTGGAAGGGCTCTTTATTATATTGAAAAGGCATTTACTACTGCTGCCTCTAAGTTGGAGAAGATTGGATATGTTGATTCTGAAAACGAGGCTACAATACCGGAACCAAAGGTGGCTAAGGAGACAATTGACTTAAAAGAAATTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGCTTCCGCCAGCTCCTCCTCCACCACCATTTCCAGAAGGGTATGTTCCGCCTTCAACAGCAGAAACTGAGAAAGGCCCTGAAAGTCAGGAAACAGCTGAGCCACAAGCACCTACTGTTGATCCCATAATTGATCAAGGACCTTCAAAAAGAATGAAGTTTTGA 744 0.4341 MAAPGGGMLDGVQTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSQHPLDLSQLTKMTGIEYVLSEVMEPHLFIMRKQKRDGPDKITAMLAYYILDGSIYQAPQLSNVFAARIGRALYYIEKAFTTAASKLEKIGYVDSENEATIPEPKVAKETIDLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPESQETAEPQAPTVDPIIDQGPSKRMKF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00518 247 Gene3D Mediator complex, subunit Med6 19 148 IPR038566 -
Trre16g00518 247 PIRSF MED6_meta/plant 12 247 IPR016820 GO:0003712|GO:0006357|GO:0016592
Trre16g00518 247 MobiDBLite consensus disorder prediction 193 247 - -
Trre16g00518 247 Pfam MED6 mediator sub complex component 25 150 IPR007018 GO:0003712|GO:0006357|GO:0016592
Trre16g00518 247 MobiDBLite consensus disorder prediction 194 209 - -
Trre16g00518 247 FunFam Mediator of RNA polymerase II transcription subunit 6 19 148 - -
Trre16g00518 247 PANTHER MED-6-RELATED 13 247 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00518 Trre-Chr16 3836306 3839619 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Trre16g00518 Med6 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00518 K15128 - gmx:100792248 405.216