Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00516 ATGGGAATGTTAGTGCATTTTCTTTCGGTTCTATTGCTTGGTTTCCTTATTATTTTGGTTTTGATTCAGGCTCAAGATCAATCAGGATTCATTAGCCTTGATTGTGGTCTAGCTGAAGATTTGAACTATTCTGAGACGAGCACAAGCATAAAATACATTTCAGATGCCAATTTCATAGATACTGGTGTAAGTAAGAGTATAGAAGCTACAAACCAGACTGGTGTATATATACCACAGGAACTAAGACATGTTAGGAGCTTTCCTAATGGAGTGAGAAATTGTTACAGAATAAATGTAACAAGTGGTACTAAATATTTAATCAGAGTTTCTTTCTATTATGGTAACTATGATAATGTAAATCAACCACCACAATTTGATCTTCTTCTTGGAGCTAATGTTTGGGACACGGTGAAGTTCCCCAATACATCATTATTAATTTACTTTTATAGTGAAATTATTTACACTCCATCACTAAATTACATACAACCATGTCTTGTTAACACTGGAAATGGAACTCCATTCATTTCAGCTATAGAATTAAGGCCTTTGAACAATACACTTTATGCCACAGACTCAGCTGATTCAGTATTATTACTCTTTCAGCGATCTAATTTAGGTTCCGAAATCATAGCCAGTTACAGGTACAAAGATGATGTTTATGACCGCGACTGGTTCCCTTATGAATCATCGAGTGATTGGAGACAATTAAGCACCTCAGTTAAAAATGTAAATGTATCGTTTCCGAATCCTTATAAACCACCAACAATTGTGATGAGCACTGCTGTTACACCAGTAAATGAAAGTGCCCCTTTACAATTTAATTGGGATGCAGATAATATAAATGACAAATACTACATCTACTTGTACTTCTATGAGGTTGAAAAGCTGGCAGATAATGAAACTAGAGTGTTCAATATCACAGTGAATGACAAGTTTTGGTTTGGACCTGTGGTACCACAAAATACCATATTAAGTAAAATATCTTTGTCTCCAGCAAAAACGCATCGAATTTCCATTTCTAAGGCAAATAATTCAACCCATCCACCCATCCTTAATGCTATTGAGATTTATCAACAAAAAGACTTCTCACTATCAGAAACTAATCAAGATGATGTTGATGCTATCGCAAACATCAAGAATGCTTATGGGGTGACTCGAAATTGGCAAGGAGATCCATGTGCCCCTGAAATTTACATGTGGGAAGGCCTAAACTGTAGTATTGACGACAACAACATCCCAAGAATCACATCCTTGAATTTGTCTTCAAGTAAGTTGACAGGGGAAATAGAATCTTCCATATCAAAGCTCACTATGCTACAAAAACTGGATTTATCAAACAATAGCTTAAATGGGCATTTACCTGATTTTTTGATGCAAATGCGTTCACTAAAAGTCTTAAACGTGCGAAGGAACAAACTTACAGGGTTAGTCCCAAGTGGACTCCTTGAGAGATCAAAAACAGGTTCACTATCACTAAACATGGATGATAATCCTGGTCTTTGTAAGATGGAATCTTGTGGAAAGAAAAATTCATCTGTACCACTGATTGCATCGCTTTCGACATTAATTGTTTTAATCCTCTTGATTTGTCTTGGATTTTGGTTATTCAAAAGACTGAAAGTTACATCTACAAATTCAAAGAAAAGGGGTTCAATGAAATCAAAGCATCAAACATTCAGTTATACTGAAATTATCAATATTACTGATAACTTCAAAACTATTATCGGAGAAGGAGGATTTGGAAAAATTTATGTTGGTGTTCTACAAAATCACACCCAAGTGGCGGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATAATTGTTCATCATAGAAATTTGGTTTCTCTCATTGGATATTGCGACGAAGGTGAAATCAAAGCATTGATTTATGAATACATGTCTAATGGAAATCTCCTACAACACTTATTAGTGGAAAATTCAAATATCTTAAAATGGAATGAGAGACTTAACATTGCAGTTGATGTAGCACAAGGATTAGATTATCTACATAATGGATGTAAGCCACCTATTATGCATAGAGATTTGAAACCTTCCAACATATTACTAGATGAAAACATGCATGCAAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAATGATATTAATTCTCATATATCCACACGCCCGGCCGGTACACTTGGTTATGCTGATCCTGAATATCAGAGAACAGGAAACACAAATAAAAAAAATGATGTGTATAGCTTTGGTATAGTTCTATTTGTATTGGTCACTGGTCGTCAAGCATTAGTAAGAGCAGGAGGAGAAAATTATCACATACTTGAATGGGTTATTCCTATAATCAAAGGAGGAGATATTCAAAATGTTATTGATCCAAGACTGGAGGGGGAATTCAGCATCAATTCAGCATGGAAAGTCGTAGAGATTGCAATGACATGCATTTCACCAAATGCGATTGAAAGGCCCGACATTAGCCAAATATTGGCAGAACTGAAGGACAGTGTATCTTTGGAAATGGTTCAGAGACATGGAGGAGAAAACGATGTAATTGAATCGACTTCATTACTATTTCAATCAGAAACTACTCCTTTGCCTAGGTAA 2622 0.3551 MGMLVHFLSVLLLGFLIILVLIQAQDQSGFISLDCGLAEDLNYSETSTSIKYISDANFIDTGVSKSIEATNQTGVYIPQELRHVRSFPNGVRNCYRINVTSGTKYLIRVSFYYGNYDNVNQPPQFDLLLGANVWDTVKFPNTSLLIYFYSEIIYTPSLNYIQPCLVNTGNGTPFISAIELRPLNNTLYATDSADSVLLLFQRSNLGSEIIASYRYKDDVYDRDWFPYESSSDWRQLSTSVKNVNVSFPNPYKPPTIVMSTAVTPVNESAPLQFNWDADNINDKYYIYLYFYEVEKLADNETRVFNITVNDKFWFGPVVPQNTILSKISLSPAKTHRISISKANNSTHPPILNAIEIYQQKDFSLSETNQDDVDAIANIKNAYGVTRNWQGDPCAPEIYMWEGLNCSIDDNNIPRITSLNLSSSKLTGEIESSISKLTMLQKLDLSNNSLNGHLPDFLMQMRSLKVLNVRRNKLTGLVPSGLLERSKTGSLSLNMDDNPGLCKMESCGKKNSSVPLIASLSTLIVLILLICLGFWLFKRLKVTSTNSKKRGSMKSKHQTFSYTEIINITDNFKTIIGEGGFGKIYVGVLQNHTQVAVKILSPSSMQGYKEFQSEAQLLIIVHHRNLVSLIGYCDEGEIKALIYEYMSNGNLLQHLLVENSNILKWNERLNIAVDVAQGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGNDINSHISTRPAGTLGYADPEYQRTGNTNKKNDVYSFGIVLFVLVTGRQALVRAGGENYHILEWVIPIIKGGDIQNVIDPRLEGEFSINSAWKVVEIAMTCISPNAIERPDISQILAELKDSVSLEMVQRHGGENDVIESTSLLFQSETTPLPR 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00516 873 PANTHER OS07G0107800 PROTEIN-RELATED 31 842 - -
Trre16g00516 873 SMART serkin_6 569 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00516 873 ProSiteProfiles Protein kinase domain profile. 569 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00516 873 FunFam Leucine-rich repeat receptor-like kinase 370 503 - -
Trre16g00516 873 Pfam Malectin-like domain 33 358 IPR024788 -
Trre16g00516 873 Pfam Protein tyrosine and serine/threonine kinase 571 838 IPR001245 GO:0004672|GO:0006468
Trre16g00516 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Trre16g00516 873 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Trre16g00516 873 SUPERFAMILY L domain-like 385 527 - -
Trre16g00516 873 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 645 850 - -
Trre16g00516 873 Pfam Leucine rich repeat 413 473 IPR001611 GO:0005515
Trre16g00516 873 Gene3D Ribonuclease Inhibitor 372 498 IPR032675 -
Trre16g00516 873 Gene3D Transferase(Phosphotransferase) domain 1 645 858 - -
Trre16g00516 873 Gene3D Phosphorylase Kinase; domain 1 541 644 - -
Trre16g00516 873 FunFam Leucine-rich repeat receptor-like protein kinase 546 644 - -
Trre16g00516 873 SUPERFAMILY Protein kinase-like (PK-like) 550 838 IPR011009 -
Trre16g00516 873 Gene3D - 201 361 - -
Trre16g00516 873 CDD STKc_IRAK 575 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00516 Trre-Chr16 3797984 3805818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00516 4 873 Receptor kinase-like Gene Family AT2G19210 44.731 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00516 Malectin_like 6.2e-106 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00516 - - mtr:25500366 1155.58