Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00513 ATGAGCACTGCTGTTACACCAGTAAATGCCAACGCCCCTTTACAATTTCATTGGGATGCAGATGATGTAAATGATCAATACTACAGATATTTGCACTTTAATGAGGTTGAGAAGCTGAATGCAAATGAAACTAGAGAATTCAATTCCACAGTGAATAATAGAGTACATCCGGTTACAAAAGAGAAACCTGAATACCGGGTATCAGATAGCATAGAGAGCTCAAAACCTTTGACTGGAGACACAAGGTATGAAATTACCCTCTCTAAGACAGAGAATTCAACTCTTCCACCAATCCTCAATGCCATTGAGGTTTATAAAGTAAAAGACTTCTCACAATCAGAAACTCAACAAGATGATGTTAATGCTGTCACAAACATCAAGAATTTTTATCGAGTGGCTAGAAATTGGCAAGGAGATCCATGTGGTCCTGTGAAGTATATGTGGGAAGGCCTAAACTGTAGTTTTAATGGCTTAAATCCTCCAAGAATCATATCTTTTAAATATGAAAATGGAATCAAGAACTTGTCTTCAAGTGGACTGACAGGGCCGATACATTATTCCATATCGCAGCTCACTATGTTACAGTACTTGGATTTATCGAACAATAGCTTGAACGGTCCCTTACCTGATTTTCTGAACAACCTAGAGTCACTACAATTCTTAAACGTGGGGAAGAACAAAGTTACAGGATTAGTTCCAAGTGAACTCCTTGAGAGAGCAAAAACAGATTCACTATCACTTAACGTTGATGATAATCCTGGTCTTTGTATGACGGAATCCTGCGGAAAGAAGAAATTGTCTGTACCACTGATTATATCATTTTCAACATTGATTGTTGTACTCCTTGTTATTTCTTTTGGATTTTGGATCTTCATAAGGCAGAGAGTTACGTCTACAAATTCTAAGAAAAGGGGTTCAGTACTGGAATCAAAACATCAAGCATTCAGTTACACTGAAATTCTAAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTCTACAAAATCACACCCAAGTTGTGGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTATTGATTGTTCATCATAGAAATTTGGTCTCTCTAATTGGATTTTGTGACGAAGGTGAAATCAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTATTAGTGGAAAATAAAAATATCTTAAAATGGAGGGAGAGACTTAACATTGCAGTTGACACAGCACGGGGATTGGATTATCTGCATAATGGATGTAAACCACCAATTATGCATAGAGATTTGAAGCCTTCCAACATATTACTAGATGATAACATGGATGCTAAGATTTCTGATTTTGGTCTCAGTAGAGCTTTTGGTAATGATATGGATTCTCATATATCCACGCGCCCTGCCGGTACACTTGGTTACGCCGATCCTGAATTTCAGAGAACAGGAAACACAAACAAAAAGAATGATGTGTATAGCTTTGGTATAGTTCTATTTGTGTTGATCACTGGTCGTCAAGCAATAGTAAAAGCAGCCGGACAAAACATTCACATACTTGAATGGGTTATTCCTATAATCAAAGGAGGAGATATTCAAAATGTCGTTGATTCTAAGTTAGAGGGTGAATTCAACATCGATTCAGCGCGGAAAGTTGTTGAAATAGCCATGTCATGCATTTCACCAAATTTCGCTGAAAGGCCGGACATTAGTCAAATATTGACAGAACTGAAGGAGAGTTTATCTTTGGATATGATTCAGAAACCCGAAGAAAGAGAAAACGATGTAATTGAATCGACTTCATCACTATTTCAATCAGTAACCGCTCCTTTTCCTAGGTAA 1893 0.3703 MSTAVTPVNANAPLQFHWDADDVNDQYYRYLHFNEVEKLNANETREFNSTVNNRVHPVTKEKPEYRVSDSIESSKPLTGDTRYEITLSKTENSTLPPILNAIEVYKVKDFSQSETQQDDVNAVTNIKNFYRVARNWQGDPCGPVKYMWEGLNCSFNGLNPPRIISFKYENGIKNLSSSGLTGPIHYSISQLTMLQYLDLSNNSLNGPLPDFLNNLESLQFLNVGKNKVTGLVPSELLERAKTDSLSLNVDDNPGLCMTESCGKKKLSVPLIISFSTLIVVLLVISFGFWIFIRQRVTSTNSKKRGSVLESKHQAFSYTEILNITDNFKTIIGEGGFGKVYLGVLQNHTQVVVKILSPSSMQGYKEFQSEAQLLLIVHHRNLVSLIGFCDEGEIKALIYEYMANGNLQQHLLVENKNILKWRERLNIAVDTARGLDYLHNGCKPPIMHRDLKPSNILLDDNMDAKISDFGLSRAFGNDMDSHISTRPAGTLGYADPEFQRTGNTNKKNDVYSFGIVLFVLITGRQAIVKAAGQNIHILEWVIPIIKGGDIQNVVDSKLEGEFNIDSARKVVEIAMSCISPNFAERPDISQILTELKESLSLDMIQKPEERENDVIESTSSLFQSVTAPFPR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00513 630 SUPERFAMILY Protein kinase-like (PK-like) 306 594 IPR011009 -
Trre16g00513 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Trre16g00513 630 PANTHER OS07G0107800 PROTEIN-RELATED 1 598 - -
Trre16g00513 630 Gene3D Transferase(Phosphotransferase) domain 1 401 619 - -
Trre16g00513 630 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Trre16g00513 630 FunFam Leucine-rich repeat receptor-like protein kinase 300 400 - -
Trre16g00513 630 SUPERFAMILY L domain-like 116 266 - -
Trre16g00513 630 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 401 606 - -
Trre16g00513 630 FunFam Leucine-rich repeat receptor-like kinase 118 258 - -
Trre16g00513 630 Gene3D Phosphorylase Kinase; domain 1 306 400 - -
Trre16g00513 630 Pfam Protein tyrosine and serine/threonine kinase 327 594 IPR001245 GO:0004672|GO:0006468
Trre16g00513 630 CDD STKc_IRAK 331 596 - -
Trre16g00513 630 Pfam Malectin-like domain 1 107 IPR024788 -
Trre16g00513 630 SMART serkin_6 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00513 630 Gene3D Ribonuclease Inhibitor 120 249 IPR032675 -
Trre16g00513 630 ProSiteProfiles Protein kinase domain profile. 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00513 Trre-Chr16 3789199 3793092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00513 1 599 Receptor kinase-like Gene Family AT2G19210 45.066 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00513 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00513 - - mtr:25500366 854.744