Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00512 ATGAATTTTCTTTCGGTATTGCTTGCTGTCCTCCTAACTATTTTGGGTTTGATACAGGCTCAAGATCATTCAGGATTCATTAGCTTAGATTGTGGCTTACCTGGAGATTCGAGCTACTCTGCTTTGAGGACAGGCATACATTACATTTCAGATGCTAAATTCATAGATACTGGTGTAAGTAAAAGGGTAAAACGTATAGACAATATTAAAGTGCTTGGTGAACAACTACAAGAATATGTTAGGTGCTTTCCTAAGGGAGTGAGAAATTGTTACAAAATAAATGTAACAAGTGGTACTAAATATTTAATCAGAGCTATTTTCAGTTATGGTAACTGTAATTATCTAAATAAGCTACCACAATTTGATCTTCATCTTGGAGCTAATTTATGGGATACAGTGACGTTCTCCAATACATCATCTGATATCTTCGGAATTTCTGAGATCATTTACACTCCATCACAAGATTACATACAACTATGTCTTGTTAACATTGGCAAAGGAACTCCACTCATTTCAGCTATTGAACTTAGACCTTTGAACAATACAGCTTATGTCACAAACTCAGCTAAATCAGCATTATCAAACATTGTGAGATCCGGTTTAGGTTCCCAAACCGAGTTTGGATACAGGTGCTATGATGATGTTTATGACCGCATCTGGTTTCCTTATGAATTATCCAGTGATTGGAGACGATTAAGGACCTCAACTAAGAATGTTAATCTATCAATTCCTAATCCTTATAAACCACCAGCAACTATGATGAGCACTGCGATTACACCAGTAAATCCCAGCGCCCCTTTACATTTTGAATGGGAAGCAGATAATGTAAATGATCAATTCTACTTCTACATACACTTATATGACTTCCAAGAGCGGGAAGCCAATGAAACTAGATCGTTCAATATAACACTGAATGGCATGTATCCTACTGGACCTCTGGTGTTTAGATACCGGGATGAAAATGTCTTTCAAAGTAATAATCCCTTACCTTTGACTGGAAGCACAAGGTATCAACTTTCCCTTTCTAAAACAGAGAATTCAACCCTTCCACCAATCATCAATGCCATTGAGGTTTATAAAGTACAAGACTTCTCACAATCAGAAACTCAACAGGATGATGTTGATGCTATCACAAACATCAAGAAGGCTTATGAGCTGGCTCGGAATTGGCAAGGAGATCCATGTGCCCCTGTGAATTACATGTGGGAAGGCCTAAAATGCAGTATGGATGGCAATAACATACCAAGAATCACATCCTTGAACTTATCTTCAAGTGGACTGACAGGGAAGATAGCATCTTCCATCTCAAAGCTTACTATGTTAGAACACTTGGATTTGTCAAACAATAGCTTAAATGGTCCCATACCTGATTTTCTGATACAACTGCATTCACTACAAGTCTTAAATTTAGGGAAGAACGAACTTACAGGGTTAGTTCCAAGTGGACTGCTTGAGAGATCAAAAACTAAATCATTGTCACTTAGCGTGGACGATAACTCTGGTCTTTGTATGGCAAAATCCTGCAGAAAGAAGAGTTCGCATGTACCACTAATTGCTTCGATTTCAGCAATAATTGTTGTAATCCTCTTGATTTCTCTTGGATTTTGGATATTCAGAAGAAAAAAAGTTACATCCACAACTTCTAAGAAAAGGGGTTCATTGGAATCAAATCACCAAGCATTCAGTTACACTGAAATTCTAAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTCTACAAAATCGCAACCAAGTTGCGGTTAAGATACTCTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGGTCGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTGTTGTACGAATACATGGCCAATGGAAATCTCCAACAACACCTATCAGTGAAAAATACAAATATCTTAAAATGGAGTGAGAGACTTAACATTGCAGTTGATTCAGCTCACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCGTCCAACATATTACTAGACGAAAACATGCATGCCAAGATTGCAGATTTTGGTCTAAGTAGAGCTTTTGGTGATGATATTGATTCTCATATATCCACGCGCCCTGCCGGTACATTTGGTTATGTTGATCCCGAATATCAGAGAACAGGAAACACAAATAAGAAAAATGATGTCTACAGCTTTGGGATAGTTCTATTTGTTTTGATCACTGGTCGTCAAGCAATAGTAGTTAGAGAAGGCAGAGAAAACATTCACACACTTGAATGGGTTATTCCAATAATTGAAGCAGGAGATATTCAAAATGTTGTTGATCCAAGGTTGCAGGGTGAATTTGGCATCAATTCAGCATGGAAAGTTGTAGAGATTGCCATGTCATGCACTTCGCCAAATGTACTTGAAAGACCGGACCTGAGCCTAATATTATCACAGTTAAAAGAATGTCTATCCTTGGACATGATTCAAAGAAACTATGGAAGCACAAGAGCTATGGATGAATTGGTTTCTATAGCTACTGTATCAGATATCACTATTTCAGCTAGATAA 2634 0.3728 MNFLSVLLAVLLTILGLIQAQDHSGFISLDCGLPGDSSYSALRTGIHYISDAKFIDTGVSKRVKRIDNIKVLGEQLQEYVRCFPKGVRNCYKINVTSGTKYLIRAIFSYGNCNYLNKLPQFDLHLGANLWDTVTFSNTSSDIFGISEIIYTPSQDYIQLCLVNIGKGTPLISAIELRPLNNTAYVTNSAKSALSNIVRSGLGSQTEFGYRCYDDVYDRIWFPYELSSDWRRLRTSTKNVNLSIPNPYKPPATMMSTAITPVNPSAPLHFEWEADNVNDQFYFYIHLYDFQEREANETRSFNITLNGMYPTGPLVFRYRDENVFQSNNPLPLTGSTRYQLSLSKTENSTLPPIINAIEVYKVQDFSQSETQQDDVDAITNIKKAYELARNWQGDPCAPVNYMWEGLKCSMDGNNIPRITSLNLSSSGLTGKIASSISKLTMLEHLDLSNNSLNGPIPDFLIQLHSLQVLNLGKNELTGLVPSGLLERSKTKSLSLSVDDNSGLCMAKSCRKKSSHVPLIASISAIIVVILLISLGFWIFRRKKVTSTTSKKRGSLESNHQAFSYTEILNITDNFKTIIGEGGFGKVYLGVLQNRNQVAVKILSPSSMQGYKEFQSEAQLLMVVHHRNLVSLIGYCDEDEIKALLYEYMANGNLQQHLSVKNTNILKWSERLNIAVDSAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGDDIDSHISTRPAGTFGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAIVVREGRENIHTLEWVIPIIEAGDIQNVVDPRLQGEFGINSAWKVVEIAMSCTSPNVLERPDLSLILSQLKECLSLDMIQRNYGSTRAMDELVSIATVSDITISAR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00512 877 Pfam Malectin-like domain 29 361 IPR024788 -
Trre16g00512 877 SUPERFAMILY L domain-like 399 499 - -
Trre16g00512 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Trre16g00512 877 Gene3D Transferase(Phosphotransferase) domain 1 647 860 - -
Trre16g00512 877 FunFam Leucine-rich repeat receptor-like kinase 372 504 - -
Trre16g00512 877 SMART serkin_6 571 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00512 877 CDD STKc_IRAK 577 843 - -
Trre16g00512 877 FunFam Leucine-rich repeat receptor-like protein kinase 546 646 - -
Trre16g00512 877 SUPERFAMILY Protein kinase-like (PK-like) 553 841 IPR011009 -
Trre16g00512 877 Pfam Leucine rich repeat 415 475 IPR001611 GO:0005515
Trre16g00512 877 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Trre16g00512 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 647 854 - -
Trre16g00512 877 Gene3D Phosphorylase Kinase; domain 1 552 646 - -
Trre16g00512 877 Gene3D Ribonuclease Inhibitor 374 496 IPR032675 -
Trre16g00512 877 ProSiteProfiles Protein kinase domain profile. 571 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00512 877 PANTHER OS07G0107800 PROTEIN-RELATED 27 845 - -
Trre16g00512 877 Pfam Protein tyrosine and serine/threonine kinase 573 841 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00512 Trre-Chr16 3776153 3780835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00512 1 856 Receptor kinase-like Gene Family AT1G51800 44.357 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00512 Malectin_like 6.8e-101 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00512 - - mtr:25500366 1128.24