Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g00511 ATGAAGCAAACAATAATAATGAATTTTCTTTCGGTATTGCTTGCTGTCCTCCTAACTATTTTGGGTTTGATACAGGCTCAAGATCATTCAGGATTCATTAGCTTAGATTGTGGCTTACCTGGAGATTCGAGCTACTCTGCTTTGAGGACAGGCATACATTACATTTCAGATGCTAAATTCATAGATACTGGTGTAAGTAAAAGGGTAAAACGTATAGACAATATTAAAGTGCTTGGTGAACAACTACAAGAATATGTTAGGTGCTTTCCTAAGGGAGTGAGAAATTGTTACAAAATAAATGTAACAAGTGGTACTAAATATTTAATCAGAGCTATTTTCAGTTATGGTAACTGTAATTATCTAAATAAGCTACCACAATTTGATCTTCATCTTGGAGCTAATTTATGGGATACAGTGACGTTCTCCAATACATCATCTGATATCTTCGGAATTTCTGAGATCATTTACACTCCATCACAAGATTACATACAACTATGTCTTGTTAACATTGGCAAAGGAACTCCACTCATTTCAGCTATTGAACTTAGACCTTTGAACAATACAGCTTATGTCACAAACTCAGCTAAATCAGCATTATCAAACATTGTGAGATCCGGTTTAGGTTCCCAAACCGAGTTTGGATACAGGTGCTATGATGATGTTTATGACCGCATCTGGTTTCCTTATGAATTATCCAGTGATTGGAGACGATTAAGGACCTCAACTAAGAATGTTAATCTATCAATTCCTAATCCTTATAAACCACCAGCAACTATGATGAGCACTGCGATTACACCAGTAAATCCCAGCGCCCCTTTACATTTTGAATGGGAAGCAGATAATGTAAATGATCAATTCTACTTCTACATACACTTATATGACTTCCAAGAGCGGGAAGCCAATGAAACTAGATCGTTCAATATAACACTGAATGGCATGTATCCTACTGGACCTCTGGTGTTTAGATACCGGGATGAAAATGTCTTTCAAAGTAATAATCCCTTACCTTTGACTGGAAGCACAAGGTATCAACTTTCCCTTTCTAAAACAGAGAATTCAACCCTTCCACCAATCATCAATGCCATTGAGGTTTATAAAGTACAAGACTTCTCACAATCAGAAACTCAACAGGATGATGTTGATGCTATCACAAACATCAAGAAGGCTTATGAGCTGGCTCGGAATTGGCAAGGAGATCCATGTGCCCCTGTGAATTACATGTGGGAAGGCCTAAAATGCAGTATGGATGGCAATAACATACCAAGAATCACATCCTTGAACTTATCTTCAAGTGGACTGACAGGGAAGATAGCATCTTCCATCTCAAAGCTTACTATGTTAGAACACTTGGATTTGTCAAACAATAGCTTAAATGGTCCCATACCTGATTTTCTGATACAACTGCATTCACTACAAGTCTTAAATTTAGGGAAGAACGAACTTACAGGGTTAGTTCCAAGTGGACTGCTTGAGAGATCAAAAACTAAATCATTGTCACTTAGCGTGGACGATAACTCTGGTCTTTGTATGGCAAAATCCTGCAGAAAGAAGAGTTCGCATGTACCACTAATTGCTTCGATTTCAGCAATAATTGTTGTAATCCTCTTGATTTCTCTTGGATTTTGGATATTCAGAAGAAAAAAAGTTACATCCACAACTTCTAAGAAAAGGGGTTCATTGGAATCAAATCACCAAGCATTCAGTTACACTGAAATTCTAAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTCTACAAAATCGCAACCAAGTTGCGGTTAAGATACTCTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGGTCGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTGTTGTACGAATACATGGCCAATGGAAATCTCCAACAACACCTATCAGTGAAAAATACAAATATCTTAAAATGGAGTGAGAGACTTAACATTGCAGTTGATTCAGCTCACGGATTGGATTATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCGTCCAACATATTACTAGACGAAAACATGCATGCCAAGATTGCAGATTTTGGTCTAAGTAGAGCTTTTGGTGATGATATTGATTCTCATATATCCACGCGCCCTGCCGGTACATTTGGTTATGTTGATCCCGAATATCAGAGAACAGGAAACACAAATAAGAAAAATGATGTCTACAGCTTTGGGATAGTTCTATTTGTTTTGATCACTGGTCGTCAAGCAATAGTAGTTAGAGAAGGCAGAGAAAACATTCACACACTTGAATGGGTTATTCCAATAATTGAAGCAGGAGATATTCAAAATGTTGTTGATCCAAGGTTGCAGGGTGAATTTGGCATCAATTCAGCATGGAAAGTTGTAGAGATTGCCATGTCATGCACTTCGCCAAATGTACTTGAAAGACCGGACCTGAGCCTAATATTATCACAGTTAAAAGAATGTCTATCCTTGGACATGATTCAAAGAAACTATGGAAGCACAAGAGCTATGGATGAATTGGTTTCTATAGCTACTGTATCAGATATCACTATTTCAGCTAGATAA 2652 0.3718 MKQTIIMNFLSVLLAVLLTILGLIQAQDHSGFISLDCGLPGDSSYSALRTGIHYISDAKFIDTGVSKRVKRIDNIKVLGEQLQEYVRCFPKGVRNCYKINVTSGTKYLIRAIFSYGNCNYLNKLPQFDLHLGANLWDTVTFSNTSSDIFGISEIIYTPSQDYIQLCLVNIGKGTPLISAIELRPLNNTAYVTNSAKSALSNIVRSGLGSQTEFGYRCYDDVYDRIWFPYELSSDWRRLRTSTKNVNLSIPNPYKPPATMMSTAITPVNPSAPLHFEWEADNVNDQFYFYIHLYDFQEREANETRSFNITLNGMYPTGPLVFRYRDENVFQSNNPLPLTGSTRYQLSLSKTENSTLPPIINAIEVYKVQDFSQSETQQDDVDAITNIKKAYELARNWQGDPCAPVNYMWEGLKCSMDGNNIPRITSLNLSSSGLTGKIASSISKLTMLEHLDLSNNSLNGPIPDFLIQLHSLQVLNLGKNELTGLVPSGLLERSKTKSLSLSVDDNSGLCMAKSCRKKSSHVPLIASISAIIVVILLISLGFWIFRRKKVTSTTSKKRGSLESNHQAFSYTEILNITDNFKTIIGEGGFGKVYLGVLQNRNQVAVKILSPSSMQGYKEFQSEAQLLMVVHHRNLVSLIGYCDEDEIKALLYEYMANGNLQQHLSVKNTNILKWSERLNIAVDSAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGDDIDSHISTRPAGTFGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAIVVREGRENIHTLEWVIPIIEAGDIQNVVDPRLQGEFGINSAWKVVEIAMSCTSPNVLERPDLSLILSQLKECLSLDMIQRNYGSTRAMDELVSIATVSDITISAR 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g00511 883 Gene3D Transferase(Phosphotransferase) domain 1 653 866 - -
Trre16g00511 883 Pfam Leucine rich repeat 421 481 IPR001611 GO:0005515
Trre16g00511 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Trre16g00511 883 PANTHER OS07G0107800 PROTEIN-RELATED 33 851 - -
Trre16g00511 883 FunFam Leucine-rich repeat receptor-like kinase 378 510 - -
Trre16g00511 883 SMART serkin_6 577 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00511 883 Pfam Malectin-like domain 35 367 IPR024788 -
Trre16g00511 883 FunFam Leucine-rich repeat receptor-like protein kinase 552 652 - -
Trre16g00511 883 Gene3D Phosphorylase Kinase; domain 1 558 652 - -
Trre16g00511 883 SUPERFAMILY L domain-like 405 505 - -
Trre16g00511 883 CDD STKc_IRAK 583 849 - -
Trre16g00511 883 ProSiteProfiles Protein kinase domain profile. 577 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g00511 883 Gene3D Ribonuclease Inhibitor 380 502 IPR032675 -
Trre16g00511 883 Pfam Protein tyrosine and serine/threonine kinase 579 847 IPR001245 GO:0004672|GO:0006468
Trre16g00511 883 SUPERFAMILY Protein kinase-like (PK-like) 559 847 IPR011009 -
Trre16g00511 883 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Trre16g00511 883 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 653 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g00511 Trre-Chr16 3776153 3780853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g00511 7 862 Receptor kinase-like Gene Family AT1G51800 44.357 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre16g00511 Malectin_like 6.9e-101 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g00511 - - mtr:25500366 1128.24